Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s59.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 2841.13 29518.11 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 2529.30 26278.33 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2281.81 23707.02 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2113.52 21958.56 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1905.63 19798.67 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. Ptma ENSMUSG00000026238 1752.19 18204.49 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Nd3 ENSMUSG00000064360 1687.85 17536.03 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
8. mt-Nd4 ENSMUSG00000064363 1410.66 14656.15 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Co1 ENSMUSG00000064351 1272.07 13216.26 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd2 ENSMUSG00000064345 821.65 8536.59 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Actb ENSMUSG00000029580 806.80 8382.30 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Rnr1 ENSMUSG00000064337 653.36 6788.13 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
13. Eef1a1 ENSMUSG00000037742 638.51 6633.84 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Nd5 ENSMUSG00000064367 623.66 6479.56 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. Mdk ENSMUSG00000027239 455.37 4731.10 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Rpsa ENSMUSG00000032518 410.83 4268.35 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
17. Igf2 ENSMUSG00000048583 395.98 4114.06 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Npm1 ENSMUSG00000057113 395.98 4114.06 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
19. mt-Co3 ENSMUSG00000064358 371.23 3856.92 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. H19 ENSMUSG00000000031 326.68 3394.06 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
21. Rpl23 ENSMUSG00000071415 267.28 2776.92 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
22. Tuba1b ENSMUSG00000023004 247.49 2571.31 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Ran ENSMUSG00000029430 242.54 2519.89 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
24. Hsp90ab1 ENSMUSG00000023944 227.69 2365.60 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
25. Eif5a ENSMUSG00000078812 222.74 2314.17 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
26. Cfl1 ENSMUSG00000056201 217.79 2262.74 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Rps3a1 ENSMUSG00000028081 217.79 2262.74 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
28. Nedd4 ENSMUSG00000032216 207.89 2159.89 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Chchd2 ENSMUSG00000070493 202.94 2108.46 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
30. Set ENSMUSG00000054766 197.99 2057.03 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
31. Atp5g3 ENSMUSG00000018770 193.04 2005.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
32. Rps26 ENSMUSG00000025362 193.04 2005.60 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
33. Ybx1 ENSMUSG00000028639 193.04 2005.60 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
34. Hmgn1 ENSMUSG00000040681 173.24 1799.89 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
35. Rpl32 ENSMUSG00000057841 173.24 1799.89 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
36. Eef1b2 ENSMUSG00000025967 168.29 1748.46 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
37. Gm14586 ENSMUSG00000083621 168.29 1748.46 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
38. Pcbp1 ENSMUSG00000051695 168.29 1748.46 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
39. Rpl37 ENSMUSG00000041841 168.29 1748.46 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
40. Rps20 ENSMUSG00000028234 168.29 1748.46 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Tpt1 ENSMUSG00000060126 168.29 1748.46 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Gm10800 ENSMUSG00000075014 163.34 1697.03 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
43. Rplp1 ENSMUSG00000007892 163.34 1697.03 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
44. Wbp5 163.34 1697.03 WW domain binding protein 5
45. Gm13340 ENSMUSG00000083563 158.39 1645.60 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
46. Rps4x ENSMUSG00000031320 158.39 1645.60 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 148.49 1542.75 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
48. Rpl39-ps ENSMUSG00000036305 148.49 1542.75 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
49. Rpl4 ENSMUSG00000032399 143.54 1491.32 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
50. Eef2 ENSMUSG00000034994 138.59 1439.89 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
51. Hsp90aa1 ENSMUSG00000021270 138.59 1439.89 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Tubb5 ENSMUSG00000001525 138.59 1439.89 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
53. Ywhab ENSMUSG00000018326 138.59 1439.89 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Eif4g2 ENSMUSG00000005610 133.64 1388.46 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
55. Peg3 ENSMUSG00000002265 133.64 1388.46 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
56. Igfbp5 ENSMUSG00000026185 123.74 1285.60 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
57. Marcks ENSMUSG00000069662 123.74 1285.60 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
58. Pabpc1 ENSMUSG00000022283 123.74 1285.60 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
59. Rpl26 ENSMUSG00000060938 123.74 1285.60 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
60. Tmsb4x ENSMUSG00000049775 123.74 1285.60 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
61. U2af2 ENSMUSG00000030435 123.74 1285.60 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Ubb ENSMUSG00000019505 123.74 1285.60 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
63. Rpl8 ENSMUSG00000003970 118.79 1234.18 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
64. Sfpq ENSMUSG00000028820 118.79 1234.18 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
65. Tmsb10 ENSMUSG00000079523 118.79 1234.18 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
66. Anp32b ENSMUSG00000028333 113.84 1182.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
67. Meg3 ENSMUSG00000021268 113.84 1182.75 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
68. Nasp ENSMUSG00000028693 113.84 1182.75 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
69. Rps5 ENSMUSG00000012848 113.84 1182.75 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
70. Tuba1a ENSMUSG00000072235 113.84 1182.75 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
71. Ywhaz ENSMUSG00000022285 113.84 1182.75 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
72. H3f3b ENSMUSG00000016559 108.89 1131.32 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
73. Hmga2 ENSMUSG00000056758 108.89 1131.32 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
74. Calr ENSMUSG00000003814 103.94 1079.89 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
75. Hnrnpc ENSMUSG00000060373 103.94 1079.89 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
76. Hnrnph1 ENSMUSG00000007850 103.94 1079.89 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
77. Ngfrap1 103.94 1079.89 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
78. Ago2 ENSMUSG00000036698 98.99 1028.46 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
79. Col1a1 ENSMUSG00000001506 98.99 1028.46 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
80. Cox8a ENSMUSG00000035885 98.99 1028.46 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
81. Marcksl1 ENSMUSG00000047945 98.99 1028.46 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
82. Naca ENSMUSG00000061315 98.99 1028.46 nascent polypeptide-associated complex alpha polypeptide [Source:MGI Symbol;Acc:MGI:106095]
83. Rpl18a ENSMUSG00000045128 98.99 1028.46 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
84. 2810417H13Rik 94.04 977.03 RIKEN cDNA 2810417H13 gene
85. Atp5a1 ENSMUSG00000025428, ENSMUSG00000116276 94.04 977.03 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
86. Cltc ENSMUSG00000047126 94.04 977.03 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
87. Crabp1 ENSMUSG00000032291 94.04 977.03 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
88. Eef1g ENSMUSG00000071644 94.04 977.03 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
89. Gm14303 ENSMUSG00000081344 94.04 977.03 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
90. Ndufa12 ENSMUSG00000020022 94.04 977.03 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
91. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 94.04 977.03 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
92. Hnrnpa0 ENSMUSG00000007836 89.09 925.61 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
93. Hnrnpa2b1 ENSMUSG00000004980 89.09 925.61 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
94. Pbx1 ENSMUSG00000052534 89.09 925.61 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
95. Serbp1 ENSMUSG00000036371 89.09 925.61 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
96. Sfrp1 ENSMUSG00000031548 89.09 925.61 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
97. Srsf1 ENSMUSG00000018379, ENSMUSG00000098301 89.09 925.61 serine/arginine-rich splicing factor 1 [Source:MGI Symbol;Acc:MGI:98283]
98. Trim28 ENSMUSG00000005566 89.09 925.61 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
99. Tsc22d1 ENSMUSG00000022010 89.09 925.61 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
100. Txn1 ENSMUSG00000028367 89.09 925.61 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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