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Experiment Mouse_E10_5_slice_1, section s55.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5521.71 57364.74 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2184.44 22694.03 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2024.54 21032.83 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. Ptma ENSMUSG00000026238 1542.26 16022.45 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 1462.31 15191.86 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1335.94 13879.01 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Rnr1 ENSMUSG00000064337 1119.30 11628.35 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
8. mt-Co1 ENSMUSG00000064351 1039.35 10797.75 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Gm10800 ENSMUSG00000075014 961.98 9993.96 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
10. mt-Nd4 ENSMUSG00000064363 954.24 9913.55 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. Actb ENSMUSG00000029580 910.40 9458.09 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd5 ENSMUSG00000064367 907.82 9431.29 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. mt-Nd2 ENSMUSG00000064345 869.13 9029.34 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. mt-Nd3 ENSMUSG00000064360 768.55 7984.42 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Igf2 ENSMUSG00000048583 621.55 6457.25 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Mdk ENSMUSG00000027239 502.91 5224.70 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Eef1a1 ENSMUSG00000037742 474.54 4929.97 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm17132 ENSMUSG00000061331 433.28 4501.32 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
19. Rpsa ENSMUSG00000032518 407.49 4233.39 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. H19 ENSMUSG00000000031 355.91 3697.53 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
21. mt-Co3 ENSMUSG00000064358 319.80 3322.38 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. Npm1 ENSMUSG00000057113 304.33 3161.67 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Gm26870 ENSMUSG00000097312 283.69 2947.24 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
24. Nedd4 ENSMUSG00000032216 275.96 2866.93 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Cfl1 ENSMUSG00000056201 273.38 2840.13 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Malat1 ENSMUSG00000092341 273.38 2840.13 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
27. Hsp90ab1 ENSMUSG00000023944 252.75 2625.81 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. Ybx1 ENSMUSG00000028639 237.27 2464.98 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Eif5a ENSMUSG00000078812 216.64 2250.66 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
30. Gm21897 ENSMUSG00000094472 201.16 2089.84 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
31. Peg3 ENSMUSG00000002265 188.27 1955.93 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. Tubb5 ENSMUSG00000001525 185.69 1929.12 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Tuba1b ENSMUSG00000023004 177.95 1848.71 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
34. Gm13340 ENSMUSG00000083563 170.22 1768.41 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
35. Hmga2 ENSMUSG00000056758 165.06 1714.80 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
36. Rplp1 ENSMUSG00000007892 165.06 1714.80 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
37. Atp5g3 ENSMUSG00000018770 162.48 1688.00 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Pcbp1 ENSMUSG00000051695 157.32 1634.39 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
39. Rps26 ENSMUSG00000025362 157.32 1634.39 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
40. Tpt1 ENSMUSG00000060126 152.16 1580.78 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Eef1b2 ENSMUSG00000025967 149.58 1553.98 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Chchd2 ENSMUSG00000070493 147.00 1527.17 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
43. Set ENSMUSG00000054766 141.85 1473.67 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
44. Wbp5 139.27 1446.87 WW domain binding protein 5
45. Rpl4 ENSMUSG00000032399 136.69 1420.06 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
46. Col1a1 ENSMUSG00000001506 134.11 1393.26 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
47. Hsp90aa1 ENSMUSG00000021270 134.11 1393.26 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
48. Rps3a1 ENSMUSG00000028081 134.11 1393.26 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
49. Anp32b ENSMUSG00000028333 128.95 1339.65 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
50. Hnrnpc ENSMUSG00000060373 128.95 1339.65 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
51. Rpl23 ENSMUSG00000071415 128.95 1339.65 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
52. Rps20 ENSMUSG00000028234 128.95 1339.65 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Eif4g2 ENSMUSG00000005610 126.37 1312.85 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
54. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 123.79 1286.05 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
55. Ran ENSMUSG00000029430 123.79 1286.05 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
56. Ubb ENSMUSG00000019505 123.79 1286.05 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
57. Ywhab ENSMUSG00000018326 123.79 1286.05 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
58. Pabpc1 ENSMUSG00000022283 121.21 1259.24 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
59. Son ENSMUSG00000022961 121.21 1259.24 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
60. Marcksl1 ENSMUSG00000047945 116.06 1205.74 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
61. Serbp1 ENSMUSG00000036371 116.06 1205.74 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
62. Grb10 ENSMUSG00000020176 113.48 1178.94 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
63. Eef1g ENSMUSG00000071644 110.90 1152.13 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
64. Hmgn1 ENSMUSG00000040681 110.90 1152.13 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
65. Igfbp5 ENSMUSG00000026185 110.90 1152.13 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
66. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 110.90 1152.13 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
67. H3f3b ENSMUSG00000016559 108.32 1125.33 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
68. Sfrp1 ENSMUSG00000031548 108.32 1125.33 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
69. Gm14586 ENSMUSG00000083621 105.74 1098.53 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
70. Tmsb10 ENSMUSG00000079523 105.74 1098.53 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
71. Eef2 ENSMUSG00000034994 103.16 1071.72 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
72. Fn1 ENSMUSG00000026193 103.16 1071.72 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
73. Rps4x ENSMUSG00000031320 103.16 1071.72 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
74. Rpl37 ENSMUSG00000041841 100.58 1044.92 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
75. 2810417H13Rik 98.00 1018.12 RIKEN cDNA 2810417H13 gene
76. Marcks ENSMUSG00000069662 98.00 1018.12 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
77. Ngfrap1 95.42 991.31 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
78. Paics ENSMUSG00000029247 95.42 991.31 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
79. U2af2 ENSMUSG00000030435 95.42 991.31 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
80. Pfn1 ENSMUSG00000018293 92.85 964.61 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
81. Rps5 ENSMUSG00000012848 92.85 964.61 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
82. Top1 ENSMUSG00000070544 92.85 964.61 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
83. Tpm1 ENSMUSG00000032366 92.85 964.61 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
84. Gpc3 ENSMUSG00000055653 90.27 937.81 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
85. Ptn ENSMUSG00000029838 90.27 937.81 pleiotrophin [Source:MGI Symbol;Acc:MGI:97804]
86. Trim28 ENSMUSG00000005566 87.69 911.01 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
87. Capns1 ENSMUSG00000001794 85.11 884.20 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
88. Gas1 ENSMUSG00000052957 85.11 884.20 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
89. Sfpq ENSMUSG00000028820 85.11 884.20 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
90. Col3a1 ENSMUSG00000026043 82.53 857.40 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
91. Eif4b ENSMUSG00000058655 82.53 857.40 eukaryotic translation initiation factor 4B [Source:MGI Symbol;Acc:MGI:95304]
92. Gm13936 ENSMUSG00000085444 82.53 857.40 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
93. Meg3 ENSMUSG00000021268 82.53 857.40 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
94. Rpl32 ENSMUSG00000057841 82.53 857.40 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
95. Rps9 ENSMUSG00000006333 82.53 857.40 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
96. Csde1 ENSMUSG00000068823 79.95 830.60 cold shock domain containing E1, RNA binding [Source:MGI Symbol;Acc:MGI:92356]
97. Ddx5 ENSMUSG00000020719 79.95 830.60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Hnrnpk ENSMUSG00000021546 79.95 830.60 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
99. Nono ENSMUSG00000031311 79.95 830.60 non-POU-domain-containing, octamer binding protein [Source:MGI Symbol;Acc:MGI:1855692]
100. Pbrm1 ENSMUSG00000042323 79.95 830.60 polybromo 1 [Source:MGI Symbol;Acc:MGI:1923998]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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