Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s54.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4365.62 45357.60 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2396.09 24894.72 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2152.82 22367.21 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Rnr1 ENSMUSG00000064337 2052.84 21328.45 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
5. mt-Cytb ENSMUSG00000064370 1916.21 19908.90 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
6. mt-Co2 ENSMUSG00000064354 1886.21 19597.21 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1542.96 16030.93 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Nd5 ENSMUSG00000064367 1399.66 14542.09 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd4 ENSMUSG00000064363 1159.72 12049.17 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Nd2 ENSMUSG00000064345 1149.72 11945.28 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Co1 ENSMUSG00000064351 1086.41 11287.50 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. Actb ENSMUSG00000029580 966.44 10041.05 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 889.79 9244.68 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Gm10800 ENSMUSG00000075014 806.47 8379.00 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
15. Igf2 ENSMUSG00000048583 556.53 5782.19 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Mdk ENSMUSG00000027239 489.88 5089.72 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Eef1a1 ENSMUSG00000037742 483.22 5020.52 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm17132 ENSMUSG00000061331 396.57 4120.25 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
19. Rpsa ENSMUSG00000032518 333.25 3462.38 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Npm1 ENSMUSG00000057113 326.59 3393.18 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. mt-Co3 ENSMUSG00000064358 283.27 2943.10 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. H19 ENSMUSG00000000031 279.93 2908.40 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
23. Nedd4 ENSMUSG00000032216 253.27 2631.41 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Rps3a1 ENSMUSG00000028081 236.61 2458.31 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
25. Cfl1 ENSMUSG00000056201 223.28 2319.82 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Ybx1 ENSMUSG00000028639 223.28 2319.82 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
27. Peg3 ENSMUSG00000002265 216.61 2250.52 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
28. Hsp90ab1 ENSMUSG00000023944 203.28 2112.02 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Tpt1 ENSMUSG00000060126 196.62 2042.83 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Rps20 ENSMUSG00000028234 193.29 2008.23 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Gm26870 ENSMUSG00000097312 186.62 1938.93 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
32. Gm17131 ENSMUSG00000085328 179.96 1869.74 predicted gene 17131 [Source:MGI Symbol;Acc:MGI:4937958]
33. Eef1b2 ENSMUSG00000025967 173.29 1800.44 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Chchd2 ENSMUSG00000070493 169.96 1765.84 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Ran ENSMUSG00000029430 166.63 1731.24 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
36. Rpl23 ENSMUSG00000071415 166.63 1731.24 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
37. Rpl32 ENSMUSG00000057841 166.63 1731.24 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
38. Rpl39-ps ENSMUSG00000036305 166.63 1731.24 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
39. Eif5a ENSMUSG00000078812 156.63 1627.34 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Rps26 ENSMUSG00000025362 156.63 1627.34 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
41. Tubb5 ENSMUSG00000001525 156.63 1627.34 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
42. Tuba1b ENSMUSG00000023004 153.30 1592.75 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
43. Ubb ENSMUSG00000019505 153.30 1592.75 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
44. Rplp1 ENSMUSG00000007892 149.96 1558.04 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
45. Atp5g3 ENSMUSG00000018770 143.30 1488.85 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Pcbp1 ENSMUSG00000051695 143.30 1488.85 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. Tmsb4x ENSMUSG00000049775 143.30 1488.85 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
48. Col1a1 ENSMUSG00000001506 133.30 1384.95 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
49. Hmga2 ENSMUSG00000056758 133.30 1384.95 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
50. Hmgn1 ENSMUSG00000040681 129.97 1350.35 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
51. Ywhab ENSMUSG00000018326 129.97 1350.35 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
52. Gm13340 ENSMUSG00000083563 123.30 1281.05 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
53. Eif4g2 ENSMUSG00000005610 119.97 1246.46 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
54. Grb10 ENSMUSG00000020176 119.97 1246.46 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
55. Rpl4 ENSMUSG00000032399 119.97 1246.46 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
56. Sfrp1 ENSMUSG00000031548 119.97 1246.46 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
57. Marcks ENSMUSG00000069662 116.64 1211.86 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
58. Marcksl1 ENSMUSG00000047945 116.64 1211.86 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
59. Gm21897 ENSMUSG00000094472 113.31 1177.26 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
60. Pabpc1 ENSMUSG00000022283 113.31 1177.26 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
61. Fn1 ENSMUSG00000026193 109.97 1142.56 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
62. Gas1 ENSMUSG00000052957 109.97 1142.56 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
63. Pbx1 ENSMUSG00000052534 109.97 1142.56 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
64. Pkm ENSMUSG00000032294 109.97 1142.56 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
65. H3f3b ENSMUSG00000016559 106.64 1107.96 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
66. Rps4x ENSMUSG00000031320 106.64 1107.96 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
67. Tpm1 ENSMUSG00000032366 106.64 1107.96 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
68. Hnrnpc ENSMUSG00000060373 103.31 1073.36 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
69. Hsp90aa1 ENSMUSG00000021270 103.31 1073.36 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
70. Set ENSMUSG00000054766 103.31 1073.36 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
71. Eef2 ENSMUSG00000034994 99.98 1038.76 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
72. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 99.98 1038.76 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
73. Rpl37 ENSMUSG00000041841 99.98 1038.76 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
74. Hnrnpa2b1 ENSMUSG00000004980 96.64 1004.06 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
75. Rps5 ENSMUSG00000012848 96.64 1004.06 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
76. Son ENSMUSG00000022961 96.64 1004.06 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
77. Ywhae ENSMUSG00000020849 96.64 1004.06 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
78. Gpc3 ENSMUSG00000055653 93.31 969.47 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
79. Malat1 ENSMUSG00000092341 93.31 969.47 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
80. Pfn1 ENSMUSG00000018293 93.31 969.47 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
81. Ddx5 ENSMUSG00000020719 89.98 934.87 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
82. Serpinh1 ENSMUSG00000070436 89.98 934.87 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
83. Anp32b ENSMUSG00000028333 86.65 900.27 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Col3a1 ENSMUSG00000026043 86.65 900.27 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
85. Gm14586 ENSMUSG00000083621 86.65 900.27 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
86. Nucks1 ENSMUSG00000026434 86.65 900.27 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
87. Paics ENSMUSG00000029247 86.65 900.27 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
88. Serbp1 ENSMUSG00000036371 86.65 900.27 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
89. U2af2 ENSMUSG00000030435 86.65 900.27 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
90. Crabp1 ENSMUSG00000032291 83.31 865.57 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
91. Gm13936 ENSMUSG00000085444 83.31 865.57 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
92. Hnrnpa0 ENSMUSG00000007836 83.31 865.57 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
93. Igfbp4 ENSMUSG00000017493 83.31 865.57 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
94. Rpl26 ENSMUSG00000060938 83.31 865.57 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
95. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 83.31 865.57 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
96. Trim28 ENSMUSG00000005566 83.31 865.57 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
97. Tsc22d1 ENSMUSG00000022010 83.31 865.57 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
98. Ago2 ENSMUSG00000036698 79.98 830.97 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
99. Calm2 ENSMUSG00000036438 79.98 830.97 calmodulin 2 [Source:MGI Symbol;Acc:MGI:103250]
100. Rps15 ENSMUSG00000063457 79.98 830.97 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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