Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s50.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4743.78 49285.42 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2745.09 28520.06 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2596.71 26978.47 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Co2 ENSMUSG00000064354 1886.27 19597.37 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1724.40 17915.62 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. Ptma ENSMUSG00000026238 1672.69 17378.38 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1420.88 14762.21 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd4 ENSMUSG00000064363 1297.23 13477.55 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Rnr1 ENSMUSG00000064337 1265.76 13150.59 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
10. mt-Nd3 ENSMUSG00000064360 1198.31 12449.82 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Nd2 ENSMUSG00000064345 1002.71 10417.64 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Nd5 ENSMUSG00000064367 966.74 10043.93 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Gm10800 ENSMUSG00000075014 901.54 9366.53 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
14. Actb ENSMUSG00000029580 728.43 7568.01 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Eef1a1 ENSMUSG00000037742 589.04 6119.82 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Gm17132 ENSMUSG00000061331 564.31 5862.89 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
17. Igf2 ENSMUSG00000048583 539.58 5605.96 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Mdk ENSMUSG00000027239 532.83 5535.83 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. mt-Co3 ENSMUSG00000064358 400.19 4157.77 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. H19 ENSMUSG00000000031 382.20 3970.86 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
21. Rpsa ENSMUSG00000032518 312.50 3246.71 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Npm1 ENSMUSG00000057113 285.53 2966.51 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Nedd4 ENSMUSG00000032216 283.28 2943.13 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Peg3 ENSMUSG00000002265 245.06 2546.05 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
25. Col1a1 ENSMUSG00000001506 242.81 2522.67 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
26. Malat1 ENSMUSG00000092341 231.57 2405.89 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
27. Rpl23 ENSMUSG00000071415 229.32 2382.52 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
28. Gm26870 ENSMUSG00000097312 227.07 2359.14 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
29. Rps3a1 ENSMUSG00000028081 227.07 2359.14 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
30. Cfl1 ENSMUSG00000056201 220.33 2289.11 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
31. Hsp90ab1 ENSMUSG00000023944 213.58 2218.99 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Tuba1b ENSMUSG00000023004 200.09 2078.83 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
33. Eef1b2 ENSMUSG00000025967 193.35 2008.81 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Gm13340 ENSMUSG00000083563 184.36 1915.40 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
35. Ybx1 ENSMUSG00000028639 182.11 1892.03 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
36. Rpl4 ENSMUSG00000032399 168.62 1751.87 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Gm13936 ENSMUSG00000085444 166.37 1728.50 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
38. Gm21897 ENSMUSG00000094472 166.37 1728.50 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
39. Rps26 ENSMUSG00000025362 157.38 1635.10 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
40. Ubb ENSMUSG00000019505 150.63 1564.97 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
41. Atp5g3 ENSMUSG00000018770 148.38 1541.59 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Eif5a ENSMUSG00000078812 148.38 1541.59 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Meg3 ENSMUSG00000021268 146.14 1518.32 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
44. Rps20 ENSMUSG00000028234 146.14 1518.32 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Tpt1 ENSMUSG00000060126 143.89 1494.94 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Tubb5 ENSMUSG00000001525 143.89 1494.94 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
47. Col3a1 ENSMUSG00000026043 141.64 1471.57 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
48. Hmgn1 ENSMUSG00000040681 137.14 1424.81 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
49. Col1a2 ENSMUSG00000029661 134.89 1401.44 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
50. Rps4x ENSMUSG00000031320 134.89 1401.44 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
51. Wbp5 132.65 1378.16 WW domain binding protein 5
52. Gm17131 ENSMUSG00000085328 128.15 1331.41 predicted gene 17131 [Source:MGI Symbol;Acc:MGI:4937958]
53. Eif4g2 ENSMUSG00000005610 125.90 1308.04 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
54. Pbx1 ENSMUSG00000052534 125.90 1308.04 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
55. Pcbp1 ENSMUSG00000051695 125.90 1308.04 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
56. Set ENSMUSG00000054766 125.90 1308.04 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. Chchd2 ENSMUSG00000070493 123.65 1284.66 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
58. Marcks ENSMUSG00000069662 123.65 1284.66 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
59. Rpl32 ENSMUSG00000057841 121.40 1261.28 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
60. Grb10 ENSMUSG00000020176 119.16 1238.01 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
61. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 119.16 1238.01 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
62. Ran ENSMUSG00000029430 119.16 1238.01 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
63. Rplp1 ENSMUSG00000007892 116.91 1214.63 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
64. Son ENSMUSG00000022961 116.91 1214.63 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
65. Rpl37 ENSMUSG00000041841 114.66 1191.26 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
66. Rpl8 ENSMUSG00000003970 114.66 1191.26 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
67. Hsp90aa1 ENSMUSG00000021270 112.41 1167.88 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
68. Ywhab ENSMUSG00000018326 110.16 1144.51 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
69. Gm14586 ENSMUSG00000083621 105.67 1097.86 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
70. Pabpc1 ENSMUSG00000022283 105.67 1097.86 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. U2af2 ENSMUSG00000030435 103.42 1074.48 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
72. Hnrnph1 ENSMUSG00000007850 101.17 1051.10 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
73. Gm14303 ENSMUSG00000081344 98.92 1027.73 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
74. Gm26924 Gm26924 98.92 1027.73
75. Hmga2 ENSMUSG00000056758 98.92 1027.73 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
76. Hnrnpa2b1 ENSMUSG00000004980 98.92 1027.73 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
77. Gas1 ENSMUSG00000052957 96.67 1004.35 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
78. Igfbp5 ENSMUSG00000026185 96.67 1004.35 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
79. Marcksl1 ENSMUSG00000047945 96.67 1004.35 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
80. Sfrp1 ENSMUSG00000031548 96.67 1004.35 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
81. Fn1 ENSMUSG00000026193 92.18 957.70 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
82. Rps5 ENSMUSG00000012848 92.18 957.70 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
83. Tmsb4x ENSMUSG00000049775 92.18 957.70 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
84. Ngfrap1 89.93 934.33 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
85. Rpl26 ENSMUSG00000060938 89.93 934.33 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
86. Rpl39-ps ENSMUSG00000036305 87.68 910.95 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
87. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 87.68 910.95 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
88. Ago2 ENSMUSG00000036698 85.43 887.57 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
89. Morf4l1 ENSMUSG00000062270 85.43 887.57 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
90. Tpm1 ENSMUSG00000032366 85.43 887.57 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
91. Ywhaz ENSMUSG00000022285 85.43 887.57 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
92. 2810417H13Rik 83.18 864.20 RIKEN cDNA 2810417H13 gene
93. Cox8a ENSMUSG00000035885 83.18 864.20 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
94. Tmsb10 ENSMUSG00000079523 83.18 864.20 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
95. Morf4l2 ENSMUSG00000031422 80.94 840.92 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
96. Eef1g ENSMUSG00000071644 78.69 817.55 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
97. Hnrnpa0 ENSMUSG00000007836 78.69 817.55 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
98. Hnrnpc ENSMUSG00000060373 78.69 817.55 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
99. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 78.69 817.55 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
100. Atxn7l3b ENSMUSG00000074748 76.44 794.17 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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