Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s49.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3739.52 38849.76 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2950.83 30656.09 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2599.97 27011.01 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Co2 ENSMUSG00000064354 2006.21 20842.46 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. Ptma ENSMUSG00000026238 1676.34 17415.45 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 1622.36 16854.65 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1553.39 16138.12 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd4 ENSMUSG00000064363 1274.50 13240.74 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Nd3 ENSMUSG00000064360 974.61 10125.19 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Nd2 ENSMUSG00000064345 863.66 8972.54 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Actb ENSMUSG00000029580 854.66 8879.04 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Mdk ENSMUSG00000027239 677.73 7040.92 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. Igf2 ENSMUSG00000048583 623.75 6480.12 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. mt-Nd5 ENSMUSG00000064367 596.76 6199.72 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. Eef1a1 ENSMUSG00000037742 551.78 5732.43 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. H19 ENSMUSG00000000031 515.80 5358.63 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. mt-Rnr1 ENSMUSG00000064337 509.80 5296.30 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
18. Gm10800 ENSMUSG00000075014 386.85 4018.97 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
19. mt-Co3 ENSMUSG00000064358 341.86 3551.57 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Col1a1 ENSMUSG00000001506 323.87 3364.68 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
21. Rpsa ENSMUSG00000032518 305.88 3177.78 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Npm1 ENSMUSG00000057113 293.88 3053.11 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Nedd4 ENSMUSG00000032216 290.88 3021.94 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Peg3 ENSMUSG00000002265 242.90 2523.48 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
25. Hsp90ab1 ENSMUSG00000023944 224.91 2336.58 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
26. Cfl1 ENSMUSG00000056201 221.91 2305.42 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Malat1 ENSMUSG00000092341 215.91 2243.08 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
28. Gm17132 ENSMUSG00000061331 212.92 2212.02 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
29. Eef1b2 ENSMUSG00000025967 200.92 2087.35 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
30. Ubb ENSMUSG00000019505 182.93 1900.45 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Col3a1 ENSMUSG00000026043 179.93 1869.29 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
32. Gm13340 ENSMUSG00000083563 176.93 1838.12 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Rps20 ENSMUSG00000028234 176.93 1838.12 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
34. Meg3 ENSMUSG00000021268 173.93 1806.95 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
35. Tubb5 ENSMUSG00000001525 173.93 1806.95 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
36. Grb10 ENSMUSG00000020176 170.93 1775.79 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Chchd2 ENSMUSG00000070493 167.93 1744.62 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Tuba1b ENSMUSG00000023004 167.93 1744.62 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
39. Eif5a ENSMUSG00000078812 164.93 1713.45 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Rps3a1 ENSMUSG00000028081 161.94 1682.39 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
41. Rpl23 ENSMUSG00000071415 155.94 1620.06 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Ybx1 ENSMUSG00000028639 155.94 1620.06 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Atp5g3 ENSMUSG00000018770 152.94 1588.89 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Ran ENSMUSG00000029430 149.94 1557.72 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
45. Sfrp1 ENSMUSG00000031548 149.94 1557.72 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
46. Gm26870 ENSMUSG00000097312 146.94 1526.56 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
47. Pabpc1 ENSMUSG00000022283 146.94 1526.56 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
48. Son ENSMUSG00000022961 146.94 1526.56 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
49. Rps26 ENSMUSG00000025362 137.95 1433.16 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Tpt1 ENSMUSG00000060126 137.95 1433.16 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
51. Hmgn1 ENSMUSG00000040681 134.95 1401.99 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
52. Rpl4 ENSMUSG00000032399 128.95 1339.66 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
53. Rpl32 ENSMUSG00000057841 125.95 1308.49 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
54. Rps9 ENSMUSG00000006333 122.95 1277.32 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
55. Tmsb4x ENSMUSG00000049775 122.95 1277.32 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
56. Wbp5 119.95 1246.16 WW domain binding protein 5
57. Marcks ENSMUSG00000069662 116.95 1214.99 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
58. Set ENSMUSG00000054766 116.95 1214.99 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
59. Tmsb10 ENSMUSG00000079523 116.95 1214.99 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
60. Col1a2 ENSMUSG00000029661 113.95 1183.82 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
61. Pcbp1 ENSMUSG00000051695 113.95 1183.82 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
62. Rpl8 ENSMUSG00000003970 113.95 1183.82 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
63. U2af2 ENSMUSG00000030435 113.95 1183.82 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
64. Igfbp5 ENSMUSG00000026185 110.96 1152.76 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
65. Pbx1 ENSMUSG00000052534 110.96 1152.76 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
66. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 110.96 1152.76 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
67. Ddx5 ENSMUSG00000020719 107.96 1121.59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
68. Hnrnph1 ENSMUSG00000007850 107.96 1121.59 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
69. Marcksl1 ENSMUSG00000047945 107.96 1121.59 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
70. Plagl1 ENSMUSG00000019817 107.96 1121.59 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
71. Rps4x ENSMUSG00000031320 107.96 1121.59 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
72. Rpl18a ENSMUSG00000045128 101.96 1059.26 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
73. Sparc ENSMUSG00000018593 101.96 1059.26 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
74. Rpl26 ENSMUSG00000060938 98.96 1028.09 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
75. Ngfrap1 95.96 996.93 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
76. Cdc42 ENSMUSG00000006699 92.96 965.76 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
77. Eif4g2 ENSMUSG00000005610 92.96 965.76 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
78. Gas1 ENSMUSG00000052957 92.96 965.76 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
79. H3f3b ENSMUSG00000016559 92.96 965.76 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
80. Morf4l1 ENSMUSG00000062270 92.96 965.76 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
81. Rplp1 ENSMUSG00000007892 92.96 965.76 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
82. Gm14586 ENSMUSG00000083621 89.96 934.59 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
83. Gpc3 ENSMUSG00000055653 89.96 934.59 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
84. Pkm ENSMUSG00000032294 89.96 934.59 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
85. Ddx3x ENSMUSG00000000787 86.97 903.53 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
86. Eef1g ENSMUSG00000071644 86.97 903.53 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
87. Hsp90aa1 ENSMUSG00000021270 86.97 903.53 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
88. Rbm25 ENSMUSG00000010608 86.97 903.53 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
89. Rpl39-ps ENSMUSG00000036305 86.97 903.53 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
90. Rrm2 ENSMUSG00000020649 86.97 903.53 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
91. Tpm1 ENSMUSG00000032366 86.97 903.53 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
92. Tuba1a ENSMUSG00000072235 86.97 903.53 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
93. Dact1 ENSMUSG00000044548 83.97 872.36 dishevelled-binding antagonist of beta-catenin 1 [Source:MGI Symbol;Acc:MGI:1891740]
94. Eef2 ENSMUSG00000034994 83.97 872.36 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
95. Gm14303 ENSMUSG00000081344 83.97 872.36 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
96. Gm21897 ENSMUSG00000094472 83.97 872.36 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
97. Nasp ENSMUSG00000028693 83.97 872.36 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
98. Rpl37 ENSMUSG00000041841 83.97 872.36 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
99. Serpinh1 ENSMUSG00000070436 83.97 872.36 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
100. Sub1 ENSMUSG00000022205 83.97 872.36 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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