Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s47.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4982.43 51772.16 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3124.29 32464.33 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Rnr1 ENSMUSG00000064337 2406.46 25005.40 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
4. mt-Cytb ENSMUSG00000064370 2394.91 24885.38 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Co2 ENSMUSG00000064354 1768.25 18373.79 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 1597.46 16599.12 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Nd1 ENSMUSG00000064341 1537.11 15972.03 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Co1 ENSMUSG00000064351 1451.07 15077.99 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd4 ENSMUSG00000064363 1270.01 13196.61 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Nd5 ENSMUSG00000064367 1257.16 13063.08 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd2 ENSMUSG00000064345 1121.05 11648.77 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. Actb ENSMUSG00000029580 738.38 7672.47 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 724.25 7525.64 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Igf2 ENSMUSG00000048583 653.62 6791.73 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Gm10800 ENSMUSG00000075014 600.97 6244.65 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Eef1a1 ENSMUSG00000037742 557.31 5790.98 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Mdk ENSMUSG00000027239 525.21 5457.43 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. H19 ENSMUSG00000000031 450.73 4683.51 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Gm17132 ENSMUSG00000061331 417.34 4336.56 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
20. Rpsa ENSMUSG00000032518 373.68 3882.89 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. mt-Co3 ENSMUSG00000064358 367.26 3816.18 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. Peg3 ENSMUSG00000002265 259.39 2695.31 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
23. Npm1 ENSMUSG00000057113 252.97 2628.60 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Nedd4 ENSMUSG00000032216 251.69 2615.30 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Hsp90ab1 ENSMUSG00000023944 236.28 2455.17 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
26. Col1a1 ENSMUSG00000001506 220.87 2295.05 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
27. Cfl1 ENSMUSG00000056201 218.30 2268.34 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Malat1 ENSMUSG00000092341 209.31 2174.93 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
29. Gm13340 ENSMUSG00000083563 201.61 2094.92 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
30. Ybx1 ENSMUSG00000028639 192.62 2001.50 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
31. Sfrp1 ENSMUSG00000031548 183.63 1908.09 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
32. Eif5a ENSMUSG00000078812 179.78 1868.08 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
33. Gm21897 ENSMUSG00000094472 178.49 1854.68 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
34. Rps3a1 ENSMUSG00000028081 168.22 1747.96 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
35. Rpl23 ENSMUSG00000071415 161.80 1681.26 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Eef1b2 ENSMUSG00000025967 160.52 1667.95 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
37. Tuba1b ENSMUSG00000023004 155.38 1614.55 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
38. Col3a1 ENSMUSG00000026043 150.24 1561.14 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
39. Tpt1 ENSMUSG00000060126 148.96 1547.84 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Ubb ENSMUSG00000019505 147.68 1534.53 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
41. Gm26870 ENSMUSG00000097312 139.97 1454.42 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
42. Tubb5 ENSMUSG00000001525 139.97 1454.42 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
43. Meg3 ENSMUSG00000021268 136.12 1414.42 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
44. Hnrnpc ENSMUSG00000060373 134.83 1401.01 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Set ENSMUSG00000054766 128.41 1334.30 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
46. Pcbp1 ENSMUSG00000051695 127.13 1321.00 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. Rps20 ENSMUSG00000028234 127.13 1321.00 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
48. Tmsb4x ENSMUSG00000049775 125.84 1307.60 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
49. Eif4g2 ENSMUSG00000005610 123.28 1281.00 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
50. Atp5g3 ENSMUSG00000018770 121.99 1267.59 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
51. Chchd2 ENSMUSG00000070493 121.99 1267.59 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
52. Grb10 ENSMUSG00000020176 121.99 1267.59 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Gm17131 ENSMUSG00000085328 120.71 1254.29 predicted gene 17131 [Source:MGI Symbol;Acc:MGI:4937958]
54. Marcks ENSMUSG00000069662 120.71 1254.29 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
55. Rpl4 ENSMUSG00000032399 119.42 1240.89 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
56. Pbx1 ENSMUSG00000052534 118.14 1227.59 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
57. Hmga2 ENSMUSG00000056758 116.86 1214.29 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
58. Rplp1 ENSMUSG00000007892 116.86 1214.29 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
59. Wbp5 113.00 1174.18 WW domain binding protein 5
60. Col1a2 ENSMUSG00000029661 107.87 1120.87 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
61. Gm26917 ENSMUSG00000097971 106.58 1107.47 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
62. Hmgn1 ENSMUSG00000040681 106.58 1107.47 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
63. Ran ENSMUSG00000029430 106.58 1107.47 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
64. Marcksl1 ENSMUSG00000047945 104.01 1080.76 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
65. Rpl39-ps ENSMUSG00000036305 104.01 1080.76 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
66. Gm26924 Gm26924 100.16 1040.76
67. Crabp1 ENSMUSG00000032291 98.88 1027.46 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
68. Rps4x ENSMUSG00000031320 97.59 1014.05 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Ywhab ENSMUSG00000018326 97.59 1014.05 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
70. H3f3b ENSMUSG00000016559 96.31 1000.75 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
71. Rpl32 ENSMUSG00000057841 96.31 1000.75 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
72. Rps26 ENSMUSG00000025362 96.31 1000.75 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
73. Hnrnpa2b1 ENSMUSG00000004980 95.03 987.45 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
74. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 95.03 987.45 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
75. Sparc ENSMUSG00000018593 95.03 987.45 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
76. Tpm1 ENSMUSG00000032366 95.03 987.45 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
77. Hsp90aa1 ENSMUSG00000021270 93.74 974.05 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
78. Igfbp5 ENSMUSG00000026185 93.74 974.05 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
79. Pkm ENSMUSG00000032294 93.74 974.05 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
80. Gm14303 ENSMUSG00000081344 92.46 960.75 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
81. Nucks1 ENSMUSG00000026434 92.46 960.75 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
82. Rpl8 ENSMUSG00000003970 91.17 947.34 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
83. Pabpc1 ENSMUSG00000022283 87.32 907.34 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
84. U2af2 ENSMUSG00000030435 87.32 907.34 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
85. Ngfrap1 86.04 894.04 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
86. Son ENSMUSG00000022961 86.04 894.04 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
87. Gm14586 ENSMUSG00000083621 84.75 880.63 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
88. Serpinh1 ENSMUSG00000070436 84.75 880.63 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
89. Tmsb10 ENSMUSG00000079523 84.75 880.63 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
90. Hnrnph1 ENSMUSG00000007850 82.18 853.93 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
91. Rps9 ENSMUSG00000006333 82.18 853.93 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
92. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 82.18 853.93 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
93. Eef2 ENSMUSG00000034994 80.90 840.63 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
94. Tuba1a ENSMUSG00000072235 78.33 813.92 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
95. Rpl37 ENSMUSG00000041841 77.05 800.62 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
96. Anp32b ENSMUSG00000028333 75.76 787.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
97. Ddx5 ENSMUSG00000020719 73.20 760.62 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Fkbp1a ENSMUSG00000032966 73.20 760.62 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
99. Fn1 ENSMUSG00000026193 73.20 760.62 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
100. Gas1 ENSMUSG00000052957 73.20 760.62 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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