Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s46.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4637.21 48180.21 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3000.28 31172.65 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2911.08 30245.87 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. Ptma ENSMUSG00000026238 1858.45 19309.14 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 1669.63 17347.31 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1625.03 16883.92 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1512.04 15709.97 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr1 ENSMUSG00000064337 1180.49 12265.19 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
9. mt-Nd4 ENSMUSG00000064363 1161.16 12064.35 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Nd5 ENSMUSG00000064367 1068.98 11106.61 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd2 ENSMUSG00000064345 945.58 9824.49 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. Actb ENSMUSG00000029580 884.62 9191.13 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 728.51 7569.16 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Eef1a1 ENSMUSG00000037742 596.19 6194.36 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Gm10800 ENSMUSG00000075014 551.59 5730.97 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Mdk ENSMUSG00000027239 547.13 5684.63 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. mt-Co3 ENSMUSG00000064358 466.84 4850.43 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Igf2 ENSMUSG00000048583 459.41 4773.23 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. H19 ENSMUSG00000000031 431.16 4479.72 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
20. Rpsa ENSMUSG00000032518 340.47 3537.45 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Npm1 ENSMUSG00000057113 313.71 3259.42 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Nedd4 ENSMUSG00000032216 279.51 2904.08 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Col1a1 ENSMUSG00000001506 233.42 2425.21 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
24. Peg3 ENSMUSG00000002265 225.99 2348.02 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
25. Gm17132 ENSMUSG00000061331 224.50 2332.54 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
26. Hsp90ab1 ENSMUSG00000023944 220.04 2286.20 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Gm13340 ENSMUSG00000083563 218.55 2270.72 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
28. Rpl23 ENSMUSG00000071415 214.09 2224.38 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
29. Rps20 ENSMUSG00000028234 188.82 1961.82 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
30. Ybx1 ENSMUSG00000028639 184.36 1915.48 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
31. Tuba1b ENSMUSG00000023004 173.95 1807.33 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
32. Chchd2 ENSMUSG00000070493 169.49 1760.99 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
33. Eef1b2 ENSMUSG00000025967 165.03 1714.65 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Rps3a1 ENSMUSG00000028081 165.03 1714.65 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
35. Tubb5 ENSMUSG00000001525 159.08 1652.83 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
36. Meg3 ENSMUSG00000021268 157.60 1637.45 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
37. Tpt1 ENSMUSG00000060126 156.11 1621.97 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Cfl1 ENSMUSG00000056201 154.62 1606.49 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
39. Pkm ENSMUSG00000032294 154.62 1606.49 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
40. Ubb ENSMUSG00000019505 154.62 1606.49 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
41. Rps4x ENSMUSG00000031320 151.65 1575.63 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
42. Wbp5 150.16 1560.15 WW domain binding protein 5
43. Rpl4 ENSMUSG00000032399 147.19 1529.29 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
44. Rpl32 ENSMUSG00000057841 144.22 1498.43 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
45. Sfrp1 ENSMUSG00000031548 142.73 1482.95 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
46. Hmgn1 ENSMUSG00000040681 141.24 1467.47 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
47. Marcks ENSMUSG00000069662 141.24 1467.47 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
48. Col3a1 ENSMUSG00000026043 138.27 1436.61 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
49. Hmga2 ENSMUSG00000056758 138.27 1436.61 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
50. Eif4g2 ENSMUSG00000005610 136.78 1421.13 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
51. Set ENSMUSG00000054766 135.30 1405.76 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
52. Eif5a ENSMUSG00000078812 133.81 1390.27 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
53. Crabp1 ENSMUSG00000032291 132.32 1374.79 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
54. Hnrnpc ENSMUSG00000060373 132.32 1374.79 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Rps5 ENSMUSG00000012848 130.83 1359.31 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
56. Ywhab ENSMUSG00000018326 126.37 1312.97 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Rps26 ENSMUSG00000025362 124.89 1297.60 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
58. Hsp90aa1 ENSMUSG00000021270 123.40 1282.12 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Son ENSMUSG00000022961 123.40 1282.12 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
60. Grb10 ENSMUSG00000020176 120.43 1251.26 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
61. Pabpc1 ENSMUSG00000022283 120.43 1251.26 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Rpl39-ps ENSMUSG00000036305 115.97 1204.92 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
63. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 114.48 1189.44 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
64. Atp5g3 ENSMUSG00000018770 110.02 1143.10 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
65. Gm14586 ENSMUSG00000083621 110.02 1143.10 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
66. Hnrnpa2b1 ENSMUSG00000004980 110.02 1143.10 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
67. Hnrnph1 ENSMUSG00000007850 108.53 1127.62 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
68. Gm26870 ENSMUSG00000097312 107.05 1112.24 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
69. Rplp1 ENSMUSG00000007892 107.05 1112.24 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
70. Ddx5 ENSMUSG00000020719 102.59 1065.90 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
71. Malat1 ENSMUSG00000092341 102.59 1065.90 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
72. Ran ENSMUSG00000029430 102.59 1065.90 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
73. Rpl37 ENSMUSG00000041841 101.10 1050.42 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
74. Marcksl1 ENSMUSG00000047945 96.64 1004.08 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
75. 2810417H13Rik 95.15 988.60 RIKEN cDNA 2810417H13 gene
76. Gm21897 ENSMUSG00000094472 93.67 973.22 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
77. Hspa5 ENSMUSG00000026864 89.21 926.88 heat shock protein 5 [Source:MGI Symbol;Acc:MGI:95835]
78. Rpl8 ENSMUSG00000003970 89.21 926.88 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
79. Caprin1 ENSMUSG00000027184 87.72 911.40 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
80. Igfbp5 ENSMUSG00000026185 87.72 911.40 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
81. Fn1 ENSMUSG00000026193 86.23 895.92 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
82. Rpl18a ENSMUSG00000045128 86.23 895.92 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
83. H3f3b ENSMUSG00000016559 84.75 880.55 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
84. Anp32b ENSMUSG00000028333 83.26 865.06 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
85. Banf1 ENSMUSG00000024844 83.26 865.06 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
86. Col1a2 ENSMUSG00000029661 83.26 865.06 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
87. Paics ENSMUSG00000029247 83.26 865.06 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
88. Pcbp1 ENSMUSG00000051695 83.26 865.06 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
89. Tmsb4x ENSMUSG00000049775 83.26 865.06 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
90. U2af2 ENSMUSG00000030435 83.26 865.06 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
91. Ago2 ENSMUSG00000036698 81.77 849.58 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
92. Gm6274 ENSMUSG00000081281 81.77 849.58 predicted gene 6274 [Source:MGI Symbol;Acc:MGI:3645367]
93. Rpl7 ENSMUSG00000043716 81.77 849.58 ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
94. Pbx1 ENSMUSG00000052534 80.29 834.21 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
95. Rpl26 ENSMUSG00000060938 80.29 834.21 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
96. Tmsb10 ENSMUSG00000079523 80.29 834.21 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
97. Rps9 ENSMUSG00000006333 78.80 818.73 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
98. Rrm2 ENSMUSG00000020649 78.80 818.73 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
99. Sub1 ENSMUSG00000022205 78.80 818.73 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
100. Scd2 ENSMUSG00000025203 77.31 803.24 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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