Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s44.

Sample reads: 96,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 9121.57 94771.63 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Rnr1 ENSMUSG00000064337 2575.89 26763.08 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
3. mt-Atp6 ENSMUSG00000064357 2303.69 23934.96 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Cytb ENSMUSG00000064370 2300.03 23896.94 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Co2 ENSMUSG00000064354 1708.13 17747.19 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 1488.90 15469.43 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Nd1 ENSMUSG00000064341 1461.50 15184.75 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Co1 ENSMUSG00000064351 1108.91 11521.39 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd4 ENSMUSG00000064363 1085.16 11274.64 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Nd5 ENSMUSG00000064367 1074.20 11160.76 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd2 ENSMUSG00000064345 1012.09 10515.45 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Nd3 ENSMUSG00000064360 959.11 9965.00 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 754.50 7839.13 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 560.85 5827.14 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Gm10800 ENSMUSG00000075014 438.45 4555.42 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Mdk ENSMUSG00000027239 423.83 4403.52 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Rpsa ENSMUSG00000032518 409.22 4251.73 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. mt-Co3 ENSMUSG00000064358 403.74 4194.79 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Igf2 ENSMUSG00000048583 394.60 4099.83 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. H19 ENSMUSG00000000031 385.47 4004.97 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
21. Npm1 ENSMUSG00000057113 327.01 3397.58 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Peg3 ENSMUSG00000002265 275.86 2866.14 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
23. Nedd4 ENSMUSG00000032216 261.24 2714.24 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Tuba1b ENSMUSG00000023004 208.26 2163.79 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Malat1 ENSMUSG00000092341 204.61 2125.86 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
26. Cfl1 ENSMUSG00000056201 200.96 2087.94 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Hmga2 ENSMUSG00000056758 188.17 1955.06 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
28. Gm13340 ENSMUSG00000083563 186.34 1936.04 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
29. Rps3a1 ENSMUSG00000028081 186.34 1936.04 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
30. Eif5a ENSMUSG00000078812 175.38 1822.17 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
31. Rpl23 ENSMUSG00000071415 175.38 1822.17 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
32. Set ENSMUSG00000054766 173.55 1803.16 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Eef1b2 ENSMUSG00000025967 171.73 1784.25 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Rps20 ENSMUSG00000028234 171.73 1784.25 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
35. Hsp90ab1 ENSMUSG00000023944 162.59 1689.28 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Atp5g3 ENSMUSG00000018770 153.46 1594.42 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Chchd2 ENSMUSG00000070493 153.46 1594.42 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Tpt1 ENSMUSG00000060126 149.80 1556.40 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Rplp1 ENSMUSG00000007892 146.15 1518.47 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
40. Hnrnpc ENSMUSG00000060373 142.50 1480.55 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Pabpc1 ENSMUSG00000022283 142.50 1480.55 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
42. Rpl4 ENSMUSG00000032399 142.50 1480.55 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Rps26 ENSMUSG00000025362 142.50 1480.55 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
44. Ybx1 ENSMUSG00000028639 142.50 1480.55 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Son ENSMUSG00000022961 140.67 1461.54 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
46. Ran ENSMUSG00000029430 137.02 1423.62 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
47. Gm17132 ENSMUSG00000061331 135.19 1404.60 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
48. Marcks ENSMUSG00000069662 135.19 1404.60 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
49. Rps4x ENSMUSG00000031320 135.19 1404.60 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
50. Ubb ENSMUSG00000019505 131.53 1366.58 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
51. Hmgn1 ENSMUSG00000040681 127.88 1328.65 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
52. Rpl32 ENSMUSG00000057841 127.88 1328.65 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
53. Eif4g2 ENSMUSG00000005610 126.05 1309.64 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
54. Gm14586 ENSMUSG00000083621 122.40 1271.72 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
55. Gm26870 ENSMUSG00000097312 122.40 1271.72 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
56. Ngfrap1 122.40 1271.72 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
57. Tubb5 ENSMUSG00000001525 122.40 1271.72 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
58. Rpl18a ENSMUSG00000045128 120.57 1252.70 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
59. Rpl39-ps ENSMUSG00000036305 120.57 1252.70 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
60. Wbp5 118.75 1233.79 WW domain binding protein 5
61. Hsp90aa1 ENSMUSG00000021270 115.09 1195.77 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
62. Eef2 ENSMUSG00000034994 113.27 1176.86 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
63. Sfrp1 ENSMUSG00000031548 113.27 1176.86 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
64. 2810417H13Rik 111.44 1157.84 RIKEN cDNA 2810417H13 gene
65. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 107.79 1119.92 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
66. Pbx1 ENSMUSG00000052534 104.13 1081.89 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
67. Col1a1 ENSMUSG00000001506 102.30 1062.88 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
68. Marcksl1 ENSMUSG00000047945 102.30 1062.88 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
69. Pkm ENSMUSG00000032294 102.30 1062.88 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
70. Rpl8 ENSMUSG00000003970 98.65 1024.96 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
71. H3f3b ENSMUSG00000016559 96.82 1005.94 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
72. Ywhab ENSMUSG00000018326 96.82 1005.94 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
73. Hnrnph1 ENSMUSG00000007850 95.00 987.03 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
74. Pcbp1 ENSMUSG00000051695 95.00 987.03 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
75. Rpl37 ENSMUSG00000041841 95.00 987.03 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
76. Rps5 ENSMUSG00000012848 95.00 987.03 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
77. Rps9 ENSMUSG00000006333 95.00 987.03 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
78. Anp32b ENSMUSG00000028333 93.17 968.02 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
79. Top2a ENSMUSG00000020914 93.17 968.02 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
80. Gm5963 ENSMUSG00000052192 87.69 911.08 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
81. Eef1g ENSMUSG00000071644 85.86 892.07 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
82. Hnrnpa2b1 ENSMUSG00000004980 85.86 892.07 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
83. Rpl7 ENSMUSG00000043716 85.86 892.07 ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
84. Sub1 ENSMUSG00000022205 85.86 892.07 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
85. Ptn ENSMUSG00000029838 84.04 873.16 pleiotrophin [Source:MGI Symbol;Acc:MGI:97804]
86. Serbp1 ENSMUSG00000036371 84.04 873.16 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
87. Tmsb10 ENSMUSG00000079523 84.04 873.16 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
88. Grb10 ENSMUSG00000020176 82.21 854.15 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
89. Hnrnpa0 ENSMUSG00000007836 82.21 854.15 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
90. Rpl26 ENSMUSG00000060938 82.21 854.15 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
91. Gm5805 ENSMUSG00000061848 80.38 835.14 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
92. Gm8292 ENSMUSG00000100215 80.38 835.14 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
93. Col3a1 ENSMUSG00000026043 78.56 816.23 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
94. Gpc3 ENSMUSG00000055653 78.56 816.23 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
95. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 78.56 816.23 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
96. Tmsb4x ENSMUSG00000049775 78.56 816.23 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
97. Tpm4 ENSMUSG00000031799 76.73 797.21 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
98. Calm1 ENSMUSG00000001175 74.90 778.20 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
99. Cks1b ENSMUSG00000028044 74.90 778.20 CDC28 protein kinase 1b [Source:MGI Symbol;Acc:MGI:1889208]
100. Igfbp5 ENSMUSG00000026185 73.07 759.19 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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