Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s41.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Atp6 ENSMUSG00000064357 4090.29 42498.70 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
2. mt-Rnr2 ENSMUSG00000064339 3331.50 34614.76 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 3070.26 31900.44 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Co2 ENSMUSG00000064354 2352.08 24438.45 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. Ptma ENSMUSG00000026238 1972.68 20496.43 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 1704.06 17705.43 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1601.59 16640.75 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd4 ENSMUSG00000064363 1404.97 14597.84 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Nd2 ENSMUSG00000064345 1349.58 14022.33 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd3 ENSMUSG00000064360 1318.20 13696.29 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Rnr1 ENSMUSG00000064337 1226.81 12746.73 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
12. mt-Nd5 ENSMUSG00000064367 1125.27 11691.72 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Actb ENSMUSG00000029580 879.72 9140.42 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 784.64 8152.52 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. H19 ENSMUSG00000000031 617.56 6416.54 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. mt-Co3 ENSMUSG00000064358 531.71 5524.54 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Igf2 ENSMUSG00000048583 503.09 5227.18 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Mdk ENSMUSG00000027239 496.63 5160.06 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Rpsa ENSMUSG00000032518 474.48 4929.92 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Npm1 ENSMUSG00000057113 296.32 3078.81 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Nedd4 ENSMUSG00000032216 237.24 2464.96 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Gm13340 ENSMUSG00000083563 236.32 2455.40 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Cfl1 ENSMUSG00000056201 235.39 2445.74 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Gm10800 ENSMUSG00000075014 214.16 2225.15 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
25. Rps26 ENSMUSG00000025362 211.39 2196.37 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
26. Rpl23 ENSMUSG00000071415 200.31 2081.25 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
27. Rps3a1 ENSMUSG00000028081 198.47 2062.13 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
28. Tuba1b ENSMUSG00000023004 193.85 2014.13 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Tpt1 ENSMUSG00000060126 190.16 1975.79 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Rps20 ENSMUSG00000028234 188.31 1956.57 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Tubb5 ENSMUSG00000001525 188.31 1956.57 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
32. Rpl39-ps ENSMUSG00000036305 187.39 1947.01 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
33. Hsp90ab1 ENSMUSG00000023944 181.85 1889.45 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Eif5a ENSMUSG00000078812 175.39 1822.33 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Eef1b2 ENSMUSG00000025967 168.93 1755.21 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
36. Rps4x ENSMUSG00000031320 167.08 1735.99 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
37. Grb10 ENSMUSG00000020176 162.47 1688.09 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
38. Peg3 ENSMUSG00000002265 156.93 1630.53 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
39. Rpl4 ENSMUSG00000032399 153.24 1592.19 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Eif4g2 ENSMUSG00000005610 149.54 1553.74 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Hsp90aa1 ENSMUSG00000021270 143.08 1486.62 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Chchd2 ENSMUSG00000070493 142.16 1477.06 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
43. Pabpc1 ENSMUSG00000022283 141.24 1467.50 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
44. Hmgn1 ENSMUSG00000040681 140.31 1457.84 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
45. Ybx1 ENSMUSG00000028639 139.39 1448.28 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
46. Rpl32 ENSMUSG00000057841 136.62 1419.50 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
47. Rplp1 ENSMUSG00000007892 136.62 1419.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
48. Atp5g3 ENSMUSG00000018770 135.70 1409.94 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Ran ENSMUSG00000029430 134.77 1400.28 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
50. Crabp1 ENSMUSG00000032291 130.16 1352.38 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
51. Sfrp1 ENSMUSG00000031548 130.16 1352.38 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
52. Ubb ENSMUSG00000019505 130.16 1352.38 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
53. Hnrnpc ENSMUSG00000060373 129.24 1342.82 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Marcks ENSMUSG00000069662 122.77 1275.60 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
55. Hnrnpa2b1 ENSMUSG00000004980 121.85 1266.04 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
56. Rpl37 ENSMUSG00000041841 121.85 1266.04 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
57. H3f3b ENSMUSG00000016559 120.93 1256.48 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
58. Son ENSMUSG00000022961 117.23 1218.04 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
59. Tmsb10 ENSMUSG00000079523 117.23 1218.04 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
60. Hnrnph1 ENSMUSG00000007850 116.31 1208.48 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
61. Ngfrap1 116.31 1208.48 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
62. Wbp5 115.39 1198.92 WW domain binding protein 5
63. Gm14586 ENSMUSG00000083621 112.62 1170.14 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
64. Hmga2 ENSMUSG00000056758 111.70 1160.58 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
65. Ywhab ENSMUSG00000018326 111.70 1160.58 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
66. Eef2 ENSMUSG00000034994 110.77 1150.92 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
67. Pkm ENSMUSG00000032294 108.93 1131.80 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
68. Rpl13a ENSMUSG00000074129 108.93 1131.80 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
69. Malat1 ENSMUSG00000092341 107.08 1112.58 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
70. Paics ENSMUSG00000029247 107.08 1112.58 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
71. Rpl18a ENSMUSG00000045128 102.46 1064.57 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
72. Set ENSMUSG00000054766 102.46 1064.57 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
73. Rrm2 ENSMUSG00000020649 100.62 1045.46 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
74. Fkbp1a ENSMUSG00000032966 99.70 1035.90 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
75. Pbx1 ENSMUSG00000052534 98.77 1026.23 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
76. Anp32b ENSMUSG00000028333 97.85 1016.68 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
77. Rps9 ENSMUSG00000006333 97.85 1016.68 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
78. Gm14303 ENSMUSG00000081344 96.93 1007.12 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
79. Srsf3 ENSMUSG00000071172 96.93 1007.12 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
80. Trim28 ENSMUSG00000005566 96.93 1007.12 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
81. Rps5 ENSMUSG00000012848 93.23 968.67 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
82. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 92.31 959.11 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
83. Gm8292 ENSMUSG00000100215 91.39 949.56 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
84. Pcbp1 ENSMUSG00000051695 91.39 949.56 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
85. Ywhae ENSMUSG00000020849 87.70 911.22 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
86. Ddx5 ENSMUSG00000020719 86.77 901.55 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
87. Marcksl1 ENSMUSG00000047945 86.77 901.55 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
88. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 86.77 901.55 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
89. Ywhaz ENSMUSG00000022285 86.77 901.55 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
90. Ptn ENSMUSG00000029838 85.85 891.99 pleiotrophin [Source:MGI Symbol;Acc:MGI:97804]
91. Kpnb1 ENSMUSG00000001440 84.93 882.43 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
92. U2af2 ENSMUSG00000030435 84.93 882.43 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
93. Col1a1 ENSMUSG00000001506 84.00 872.77 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
94. Eef1g ENSMUSG00000071644 84.00 872.77 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
95. Gm10076 ENSMUSG00000060143 84.00 872.77 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
96. Serbp1 ENSMUSG00000036371 84.00 872.77 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
97. Meg3 ENSMUSG00000021268 83.08 863.21 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
98. Tmsb4x ENSMUSG00000049775 83.08 863.21 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
99. Morf4l1 ENSMUSG00000062270 82.16 853.65 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
100. Rpl8 ENSMUSG00000003970 82.16 853.65 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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