Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s40.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4654.67 48362.62 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2959.18 30746.26 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2815.66 29255.07 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. Ptma ENSMUSG00000026238 1850.44 19226.31 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 1844.09 19160.33 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Rnr1 ENSMUSG00000064337 1734.87 18025.52 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
7. mt-Nd1 ENSMUSG00000064341 1285.27 13354.12 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Co1 ENSMUSG00000064351 1263.68 13129.80 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1162.08 12074.16 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd4 ENSMUSG00000064363 1088.42 11308.82 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 980.47 10187.21 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 863.62 8973.12 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Eef1a1 ENSMUSG00000037742 692.17 7191.74 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Actb ENSMUSG00000029580 680.74 7072.98 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Gm10800 ENSMUSG00000075014 622.32 6465.98 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Mdk ENSMUSG00000027239 590.57 6136.10 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Igf2 ENSMUSG00000048583 567.70 5898.48 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Rpsa ENSMUSG00000032518 431.81 4486.56 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Co3 ENSMUSG00000064358 421.65 4381.00 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Gm17132 ENSMUSG00000061331 354.34 3681.64 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
21. H19 ENSMUSG00000000031 332.75 3457.32 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
22. Npm1 ENSMUSG00000057113 288.30 2995.47 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Nedd4 ENSMUSG00000032216 259.09 2691.98 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Hsp90ab1 ENSMUSG00000023944 229.88 2388.48 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
25. Tubb5 ENSMUSG00000001525 217.18 2256.53 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Peg3 ENSMUSG00000002265 201.94 2098.18 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
27. Tuba1b ENSMUSG00000023004 201.94 2098.18 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Eif5a ENSMUSG00000078812 194.32 2019.01 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
29. Pkm ENSMUSG00000032294 190.50 1979.32 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Chchd2 ENSMUSG00000070493 189.23 1966.12 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Eef1b2 ENSMUSG00000025967 187.96 1952.93 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
32. Rpl23 ENSMUSG00000071415 185.42 1926.54 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Rps3a1 ENSMUSG00000028081 185.42 1926.54 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
34. Hmga2 ENSMUSG00000056758 181.61 1886.95 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Ybx1 ENSMUSG00000028639 179.07 1860.56 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
36. Cfl1 ENSMUSG00000056201 176.53 1834.17 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
37. Tpt1 ENSMUSG00000060126 163.83 1702.21 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Rps26 ENSMUSG00000025362 160.02 1662.63 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
39. Gm13340 ENSMUSG00000083563 158.75 1649.43 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
40. Rps4x ENSMUSG00000031320 156.21 1623.04 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
41. Pbx1 ENSMUSG00000052534 152.40 1583.46 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
42. Rps20 ENSMUSG00000028234 152.40 1583.46 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Eif4g2 ENSMUSG00000005610 151.13 1570.26 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
44. Gm26870 ENSMUSG00000097312 149.86 1557.06 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
45. Malat1 ENSMUSG00000092341 147.32 1530.67 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
46. Atp5g3 ENSMUSG00000018770 143.51 1491.09 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Rpl4 ENSMUSG00000032399 143.51 1491.09 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
48. Set ENSMUSG00000054766 143.51 1491.09 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
49. Ran ENSMUSG00000029430 137.16 1425.11 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
50. Son ENSMUSG00000022961 137.16 1425.11 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
51. Sfrp1 ENSMUSG00000031548 135.89 1411.91 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
52. Hnrnpc ENSMUSG00000060373 134.62 1398.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
53. Wbp5 134.62 1398.72 WW domain binding protein 5
54. Gm26924 Gm26924 132.08 1372.33
55. Col1a1 ENSMUSG00000001506 130.81 1359.13 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
56. Ubb ENSMUSG00000019505 127.00 1319.55 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
57. Hsp90aa1 ENSMUSG00000021270 125.73 1306.35 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Gm21897 ENSMUSG00000094472 124.46 1293.16 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
59. Rplp1 ENSMUSG00000007892 124.46 1293.16 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
60. Hmgn1 ENSMUSG00000040681 121.92 1266.76 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
61. Pabpc1 ENSMUSG00000022283 120.65 1253.57 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Marcks ENSMUSG00000069662 115.57 1200.79 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
63. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 114.30 1187.59 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
64. U2af2 ENSMUSG00000030435 114.30 1187.59 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
65. Rpl32 ENSMUSG00000057841 110.49 1148.01 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
66. Rps5 ENSMUSG00000012848 105.41 1095.22 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
67. Marcksl1 ENSMUSG00000047945 104.14 1082.03 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
68. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 102.87 1068.83 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
69. Meg3 ENSMUSG00000021268 102.87 1068.83 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
70. Rps9 ENSMUSG00000006333 101.60 1055.64 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
71. Banf1 ENSMUSG00000024844 100.33 1042.44 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
72. Rpl39-ps ENSMUSG00000036305 100.33 1042.44 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
73. Gnb2l1 Gnb2l1 97.79 1016.05
74. Ngfrap1 97.79 1016.05 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
75. Paics ENSMUSG00000029247 97.79 1016.05 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
76. Srsf3 ENSMUSG00000071172 97.79 1016.05 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
77. Gm13936 ENSMUSG00000085444 96.52 1002.86 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
78. Pcbp1 ENSMUSG00000051695 92.71 963.27 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
79. 2810417H13Rik 91.44 950.07 RIKEN cDNA 2810417H13 gene
80. Col3a1 ENSMUSG00000026043 91.44 950.07 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
81. Crabp1 ENSMUSG00000032291 91.44 950.07 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
82. Hnrnpa2b1 ENSMUSG00000004980 91.44 950.07 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
83. Ywhae ENSMUSG00000020849 91.44 950.07 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. Ago2 ENSMUSG00000036698 88.90 923.68 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
85. Gm14586 ENSMUSG00000083621 87.63 910.49 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
86. H3f3b ENSMUSG00000016559 86.36 897.29 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
87. Gm5805 ENSMUSG00000061848 83.82 870.90 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
88. Grb10 ENSMUSG00000020176 83.82 870.90 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
89. Gm17131 ENSMUSG00000085328 82.55 857.71 predicted gene 17131 [Source:MGI Symbol;Acc:MGI:4937958]
90. Rpl41 ENSMUSG00000093674 82.55 857.71 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
91. Rpl8 ENSMUSG00000003970 82.55 857.71 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
92. Ywhab ENSMUSG00000018326 82.55 857.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
93. Gas1 ENSMUSG00000052957 81.28 844.51 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
94. Hnrnph1 ENSMUSG00000007850 81.28 844.51 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
95. Ldha ENSMUSG00000063229 81.28 844.51 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
96. Top1 ENSMUSG00000070544 81.28 844.51 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
97. Trim28 ENSMUSG00000005566 81.28 844.51 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
98. Rpl18a ENSMUSG00000045128 78.74 818.12 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
99. Eef1g ENSMUSG00000071644 77.47 804.92 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
100. Tmsb4x ENSMUSG00000049775 77.47 804.92 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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