Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s39.

Sample reads: 96,265. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4205.28 43684.56 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3303.16 34313.32 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2748.97 28556.37 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Co2 ENSMUSG00000064354 2244.28 23313.64 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. Ptma ENSMUSG00000026238 1888.11 19613.74 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 1816.60 18870.89 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1558.07 16185.27 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd4 ENSMUSG00000064363 1371.05 14242.50 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Rnr1 ENSMUSG00000064337 1289.91 13399.62 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
10. mt-Nd2 ENSMUSG00000064345 1215.65 12628.21 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Nd3 ENSMUSG00000064360 952.99 9899.69 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd5 ENSMUSG00000064367 833.35 8656.86 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Actb ENSMUSG00000029580 767.35 7971.25 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 687.59 7142.70 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Rpsa ENSMUSG00000032518 481.31 4999.86 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Mdk ENSMUSG00000027239 468.93 4871.26 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. H19 ENSMUSG00000000031 445.56 4628.49 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Igf2 ENSMUSG00000048583 441.43 4585.59 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. mt-Co3 ENSMUSG00000064358 349.29 3628.43 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Npm1 ENSMUSG00000057113 250.28 2599.92 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Nedd4 ENSMUSG00000032216 242.03 2514.21 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Gm13340 ENSMUSG00000083563 221.40 2299.91 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Hmga2 ENSMUSG00000056758 217.28 2257.11 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Peg3 ENSMUSG00000002265 210.40 2185.64 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
25. Set ENSMUSG00000054766 202.15 2099.94 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Hsp90ab1 ENSMUSG00000023944 199.40 2071.37 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Cfl1 ENSMUSG00000056201 188.40 1957.10 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Rpl23 ENSMUSG00000071415 181.52 1885.63 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
29. Rps20 ENSMUSG00000028234 178.77 1857.07 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
30. Rps4x ENSMUSG00000031320 178.77 1857.07 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
31. Gm10800 ENSMUSG00000075014 176.02 1828.50 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
32. Rps3a1 ENSMUSG00000028081 174.65 1814.27 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
33. Tuba1b ENSMUSG00000023004 173.27 1799.93 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
34. Eif5a ENSMUSG00000078812 171.90 1785.70 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Ybx1 ENSMUSG00000028639 167.77 1742.80 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
36. Rps26 ENSMUSG00000025362 163.65 1700.00 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
37. Pbx1 ENSMUSG00000052534 155.39 1614.20 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
38. Atp5g3 ENSMUSG00000018770 154.02 1599.96 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Eef1b2 ENSMUSG00000025967 152.64 1585.63 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
40. Rplp1 ENSMUSG00000007892 152.64 1585.63 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
41. Ran ENSMUSG00000029430 151.27 1571.40 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
42. Pabpc1 ENSMUSG00000022283 148.52 1542.83 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
43. Rpl32 ENSMUSG00000057841 148.52 1542.83 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
44. Tubb5 ENSMUSG00000001525 147.14 1528.49 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
45. Eif4g2 ENSMUSG00000005610 143.02 1485.70 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
46. Chchd2 ENSMUSG00000070493 141.64 1471.36 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Ubb ENSMUSG00000019505 141.64 1471.36 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
48. H3f3b ENSMUSG00000016559 137.52 1428.56 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
49. Hmgn1 ENSMUSG00000040681 134.77 1399.99 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
50. Hsp90aa1 ENSMUSG00000021270 132.02 1371.43 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Rpl37 ENSMUSG00000041841 132.02 1371.43 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
52. Hnrnpc ENSMUSG00000060373 130.64 1357.09 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
53. Pcbp1 ENSMUSG00000051695 130.64 1357.09 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
54. Rpl4 ENSMUSG00000032399 130.64 1357.09 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
55. Marcks ENSMUSG00000069662 129.27 1342.86 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
56. Tpt1 ENSMUSG00000060126 129.27 1342.86 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
57. Ywhab ENSMUSG00000018326 129.27 1342.86 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
58. Crabp1 ENSMUSG00000032291 127.89 1328.52 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
59. Son ENSMUSG00000022961 127.89 1328.52 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
60. Malat1 ENSMUSG00000092341 125.14 1299.96 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
61. Rpl39-ps ENSMUSG00000036305 125.14 1299.96 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
62. Grb10 ENSMUSG00000020176 123.77 1285.73 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
63. Wbp5 116.89 1214.26 WW domain binding protein 5
64. Gm14586 ENSMUSG00000083621 114.14 1185.69 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
65. Hnrnpa2b1 ENSMUSG00000004980 111.39 1157.12 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
66. Gm17132 ENSMUSG00000061331 107.26 1114.22 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
67. Meg3 ENSMUSG00000021268 107.26 1114.22 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
68. Marcksl1 ENSMUSG00000047945 105.89 1099.99 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
69. Rps5 ENSMUSG00000012848 104.51 1085.65 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
70. Ago2 ENSMUSG00000036698 101.76 1057.09 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
71. Rpl26 ENSMUSG00000060938 101.76 1057.09 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
72. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 100.39 1042.85 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
73. Banf1 ENSMUSG00000024844 97.64 1014.29 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
74. Pkm ENSMUSG00000032294 97.64 1014.29 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
75. 2810417H13Rik 96.26 999.95 RIKEN cDNA 2810417H13 gene
76. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 96.26 999.95 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
77. Sfrp1 ENSMUSG00000031548 96.26 999.95 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
78. Tmsb4x ENSMUSG00000049775 96.26 999.95 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
79. Gm14303 ENSMUSG00000081344 94.89 985.72 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
80. Anp32b ENSMUSG00000028333 93.51 971.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
81. Eef2 ENSMUSG00000034994 93.51 971.38 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
82. Serbp1 ENSMUSG00000036371 93.51 971.38 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
83. Hnrnph1 ENSMUSG00000007850 90.76 942.82 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
84. Rpl18a ENSMUSG00000045128 90.76 942.82 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
85. Paics ENSMUSG00000029247 89.39 928.59 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
86. Rps8 ENSMUSG00000047675 88.01 914.25 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
87. Ngfrap1 86.64 900.02 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
88. Rps9 ENSMUSG00000006333 86.64 900.02 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
89. Gm8292 ENSMUSG00000100215 85.26 885.68 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
90. Rrm2 ENSMUSG00000020649 85.26 885.68 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
91. G3bp1 ENSMUSG00000018583 83.89 871.45 GTPase activating protein (SH3 domain) binding protein 1 [Source:MGI Symbol;Acc:MGI:1351465]
92. Ldha ENSMUSG00000063229 82.51 857.12 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
93. Ptn ENSMUSG00000029838 82.51 857.12 pleiotrophin [Source:MGI Symbol;Acc:MGI:97804]
94. Rpl13a ENSMUSG00000074129 82.51 857.12 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
95. Cox8a ENSMUSG00000035885 81.14 842.88 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
96. Gnb2l1 Gnb2l1 81.14 842.88
97. Ddx3x ENSMUSG00000000787 79.76 828.55 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
98. Sub1 ENSMUSG00000022205 79.76 828.55 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
99. Tmpo ENSMUSG00000019961 79.76 828.55 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
100. Rpl8 ENSMUSG00000003970 78.38 814.21 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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