Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s38.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 6250.34 64936.06 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3092.33 32126.85 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2793.98 29027.23 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Rnr1 ENSMUSG00000064337 1927.08 20020.83 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
5. mt-Co2 ENSMUSG00000064354 1837.01 19085.07 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 1679.39 17447.53 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Nd1 ENSMUSG00000064341 1677.51 17427.99 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Nd5 ENSMUSG00000064367 1512.39 15712.53 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Co1 ENSMUSG00000064351 1427.95 14835.26 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd2 ENSMUSG00000064345 1356.65 14094.51 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Nd4 ENSMUSG00000064363 1245.94 12944.33 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 863.15 8967.44 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 801.23 8324.14 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Eef1a1 ENSMUSG00000037742 583.56 6062.72 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Mdk ENSMUSG00000027239 495.37 5146.50 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Igf2 ENSMUSG00000048583 437.20 4542.16 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Co3 ENSMUSG00000064358 418.44 4347.26 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. H19 ENSMUSG00000000031 360.27 3742.92 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Rpsa ENSMUSG00000032518 343.38 3567.45 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Npm1 ENSMUSG00000057113 332.13 3450.57 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Hmga2 ENSMUSG00000056758 303.98 3158.11 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Nedd4 ENSMUSG00000032216 238.30 2475.75 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Hsp90ab1 ENSMUSG00000023944 236.43 2456.32 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
24. Peg3 ENSMUSG00000002265 236.43 2456.32 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
25. Gm10800 ENSMUSG00000075014 213.91 2222.35 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
26. Rpl23 ENSMUSG00000071415 208.28 2163.86 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
27. Rps3a1 ENSMUSG00000028081 206.41 2144.44 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
28. Tuba1b ENSMUSG00000023004 202.65 2105.37 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Gm13340 ENSMUSG00000083563 195.15 2027.45 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
30. Rps20 ENSMUSG00000028234 187.64 1949.43 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Ybx1 ENSMUSG00000028639 187.64 1949.43 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
32. Tubb5 ENSMUSG00000001525 183.89 1910.47 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Chchd2 ENSMUSG00000070493 182.01 1890.94 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Eif5a ENSMUSG00000078812 182.01 1890.94 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Pkm ENSMUSG00000032294 172.63 1793.49 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Set ENSMUSG00000054766 168.88 1754.53 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
37. Cfl1 ENSMUSG00000056201 161.37 1676.51 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
38. Eif4g2 ENSMUSG00000005610 159.50 1657.08 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Eef1b2 ENSMUSG00000025967 157.62 1637.55 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
40. Pbx1 ENSMUSG00000052534 155.74 1618.01 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
41. Gm17132 ENSMUSG00000061331 151.99 1579.06 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
42. Hsp90aa1 ENSMUSG00000021270 151.99 1579.06 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
43. Malat1 ENSMUSG00000092341 148.24 1540.10 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
44. Rpl32 ENSMUSG00000057841 140.73 1462.07 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
45. Rpl4 ENSMUSG00000032399 138.85 1442.54 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
46. Rps26 ENSMUSG00000025362 138.85 1442.54 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. Rplp1 ENSMUSG00000007892 136.98 1423.11 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
48. 2810417H13Rik 131.35 1364.62 RIKEN cDNA 2810417H13 gene
49. Ran ENSMUSG00000029430 127.60 1325.66 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
50. Ubb ENSMUSG00000019505 127.60 1325.66 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
51. Wbp5 127.60 1325.66 WW domain binding protein 5
52. Atp5g3 ENSMUSG00000018770 125.72 1306.13 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Rps4x ENSMUSG00000031320 123.84 1286.60 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
54. Hmgn1 ENSMUSG00000040681 120.09 1247.64 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
55. Pabpc1 ENSMUSG00000022283 120.09 1247.64 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
56. Pcbp1 ENSMUSG00000051695 120.09 1247.64 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
57. Rps5 ENSMUSG00000012848 120.09 1247.64 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
58. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 112.58 1169.62 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
59. Meg3 ENSMUSG00000021268 112.58 1169.62 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
60. Gm15459 ENSMUSG00000100801 110.71 1150.19 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
61. Srsf3 ENSMUSG00000071172 108.83 1130.66 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
62. Col1a1 ENSMUSG00000001506 106.96 1111.23 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
63. Banf1 ENSMUSG00000024844 105.08 1091.70 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
64. Sfrp1 ENSMUSG00000031548 105.08 1091.70 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
65. Rpl39-ps ENSMUSG00000036305 103.20 1072.17 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
66. Serbp1 ENSMUSG00000036371 103.20 1072.17 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
67. Gm26917 ENSMUSG00000097971 101.33 1052.74 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
68. Tpt1 ENSMUSG00000060126 101.33 1052.74 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
69. Gm14586 ENSMUSG00000083621 97.57 1013.67 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
70. Tmsb4x ENSMUSG00000049775 97.57 1013.67 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.70 994.25 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Anp32b ENSMUSG00000028333 93.82 974.72 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
73. Eef2 ENSMUSG00000034994 93.82 974.72 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
74. Grb10 ENSMUSG00000020176 91.94 955.18 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
75. Gnb2l1 Gnb2l1 90.07 935.76
76. Rpl41 ENSMUSG00000093674 90.07 935.76 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
77. Rps9 ENSMUSG00000006333 90.07 935.76 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
78. Marcks ENSMUSG00000069662 88.19 916.22 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
79. Tsc22d1 ENSMUSG00000022010 88.19 916.22 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
80. Gm26924 Gm26924 86.32 896.80
81. Hnrnpa2b1 ENSMUSG00000004980 86.32 896.80 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
82. Rpl8 ENSMUSG00000003970 86.32 896.80 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
83. Top2a ENSMUSG00000020914 86.32 896.80 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
84. Col3a1 ENSMUSG00000026043 84.44 877.26 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
85. Crabp1 ENSMUSG00000032291 84.44 877.26 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
86. Gm21897 ENSMUSG00000094472 80.69 838.30 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
87. Rpl7 ENSMUSG00000043716 80.69 838.30 ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
88. Sub1 ENSMUSG00000022205 80.69 838.30 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
89. Ywhab ENSMUSG00000018326 80.69 838.30 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
90. Hnrnpa0 ENSMUSG00000007836 78.81 818.77 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
91. Ngfrap1 78.81 818.77 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
92. Top1 ENSMUSG00000070544 78.81 818.77 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
93. Tuba1a ENSMUSG00000072235 78.81 818.77 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
94. Eef1g ENSMUSG00000071644 76.93 799.24 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
95. Gas1 ENSMUSG00000052957 76.93 799.24 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
96. Kpnb1 ENSMUSG00000001440 76.93 799.24 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
97. Marcksl1 ENSMUSG00000047945 76.93 799.24 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
98. Sfpq ENSMUSG00000028820 76.93 799.24 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
99. Ywhaz ENSMUSG00000022285 76.93 799.24 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
100. Gm26870 ENSMUSG00000097312 75.06 779.81 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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