Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s36.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4796.22 49830.15 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2992.36 31089.02 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2633.28 27358.37 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Co2 ENSMUSG00000064354 2109.44 21915.95 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. Ptma ENSMUSG00000026238 1833.44 19048.46 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 1627.84 16912.38 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1540.54 16005.38 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd4 ENSMUSG00000064363 1385.64 14396.06 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Nd3 ENSMUSG00000064360 1129.35 11733.34 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Nd2 ENSMUSG00000064345 961.78 9992.38 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Nd5 ENSMUSG00000064367 888.55 9231.56 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Rnr1 ENSMUSG00000064337 887.15 9217.01 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
13. Actb ENSMUSG00000029580 778.72 8090.48 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 711.13 7388.26 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Co3 ENSMUSG00000064358 543.55 5647.19 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Mdk ENSMUSG00000027239 519.61 5398.47 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Igf2 ENSMUSG00000048583 492.86 5120.55 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. H19 ENSMUSG00000000031 353.45 3672.16 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Npm1 ENSMUSG00000057113 339.37 3525.87 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Rpsa ENSMUSG00000032518 325.29 3379.59 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Tuba1b ENSMUSG00000023004 254.88 2648.07 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Hmga2 ENSMUSG00000056758 223.90 2326.20 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Hsp90ab1 ENSMUSG00000023944 214.04 2223.76 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
24. Tubb5 ENSMUSG00000001525 211.23 2194.57 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Rps3a1 ENSMUSG00000028081 198.55 2062.83 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
26. Gm13340 ENSMUSG00000083563 195.74 2033.63 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
27. Gm10800 ENSMUSG00000075014 187.29 1945.84 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
28. Eif5a ENSMUSG00000078812 185.88 1931.19 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
29. Ybx1 ENSMUSG00000028639 180.25 1872.70 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
30. Nedd4 ENSMUSG00000032216 176.02 1828.75 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Cfl1 ENSMUSG00000056201 171.80 1784.91 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Eif4g2 ENSMUSG00000005610 170.39 1770.26 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Ran ENSMUSG00000029430 170.39 1770.26 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
34. Rpl23 ENSMUSG00000071415 170.39 1770.26 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
35. Rpl4 ENSMUSG00000032399 170.39 1770.26 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Chchd2 ENSMUSG00000070493 167.57 1740.96 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Rps20 ENSMUSG00000028234 159.12 1653.17 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Tpt1 ENSMUSG00000060126 157.71 1638.52 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Rpl32 ENSMUSG00000057841 156.31 1623.98 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
40. Hsp90aa1 ENSMUSG00000021270 154.90 1609.33 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Peg3 ENSMUSG00000002265 153.49 1594.68 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
42. Rps26 ENSMUSG00000025362 153.49 1594.68 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
43. Pkm ENSMUSG00000032294 149.27 1550.84 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
44. Gm17132 ENSMUSG00000061331 147.86 1536.19 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
45. Set ENSMUSG00000054766 147.86 1536.19 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
46. Pbx1 ENSMUSG00000052534 145.04 1506.89 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
47. Meg3 ENSMUSG00000021268 135.18 1404.45 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
48. Col1a1 ENSMUSG00000001506 132.37 1375.25 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
49. Eef1b2 ENSMUSG00000025967 132.37 1375.25 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. Hmgn1 ENSMUSG00000040681 129.55 1345.96 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
51. Pcbp1 ENSMUSG00000051695 129.55 1345.96 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
52. Rpl37 ENSMUSG00000041841 129.55 1345.96 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
53. Anp32b ENSMUSG00000028333 125.33 1302.11 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
54. Hnrnpc ENSMUSG00000060373 125.33 1302.11 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 122.51 1272.81 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
56. Malat1 ENSMUSG00000092341 122.51 1272.81 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
57. Rps5 ENSMUSG00000012848 122.51 1272.81 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
58. 2810417H13Rik 118.29 1228.97 RIKEN cDNA 2810417H13 gene
59. Ubb ENSMUSG00000019505 118.29 1228.97 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
60. Grb10 ENSMUSG00000020176 116.88 1214.32 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
61. Ngfrap1 116.88 1214.32 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
62. Hnrnpa2b1 ENSMUSG00000004980 115.47 1199.67 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
63. Rps4x ENSMUSG00000031320 115.47 1199.67 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Serbp1 ENSMUSG00000036371 115.47 1199.67 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
65. Wbp5 114.06 1185.02 WW domain binding protein 5
66. Atp5g3 ENSMUSG00000018770 112.65 1170.37 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
67. Marcksl1 ENSMUSG00000047945 108.43 1126.53 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
68. Pabpc1 ENSMUSG00000022283 108.43 1126.53 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
69. Crabp1 ENSMUSG00000032291 107.02 1111.88 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
70. Rpl18a ENSMUSG00000045128 105.61 1097.23 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
71. Rpl8 ENSMUSG00000003970 104.20 1082.58 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
72. Son ENSMUSG00000022961 104.20 1082.58 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
73. Ywhab ENSMUSG00000018326 104.20 1082.58 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
74. Marcks ENSMUSG00000069662 102.80 1068.04 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
75. Gm14586 ENSMUSG00000083621 101.39 1053.39 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
76. H3f3b ENSMUSG00000016559 101.39 1053.39 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
77. Nucks1 ENSMUSG00000026434 101.39 1053.39 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
78. Paics ENSMUSG00000029247 101.39 1053.39 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
79. Rpl39-ps ENSMUSG00000036305 99.98 1038.74 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
80. Rpl41 ENSMUSG00000093674 99.98 1038.74 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
81. U2af2 ENSMUSG00000030435 99.98 1038.74 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
82. Ddx5 ENSMUSG00000020719 95.76 994.90 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
83. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.76 994.90 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
84. Rps9 ENSMUSG00000006333 90.12 936.30 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
85. Eef2 ENSMUSG00000034994 88.71 921.65 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
86. Ywhae ENSMUSG00000020849 88.71 921.65 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
87. Fkbp1a ENSMUSG00000032966 87.31 907.10 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
88. Sfrp1 ENSMUSG00000031548 87.31 907.10 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
89. Ago2 ENSMUSG00000036698 85.90 892.45 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
90. Rpl7 ENSMUSG00000043716 85.90 892.45 ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
91. Hnrnpk ENSMUSG00000021546 84.49 877.81 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
92. Rrm2 ENSMUSG00000020649 84.49 877.81 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
93. Col3a1 ENSMUSG00000026043 83.08 863.16 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
94. Hnrnph1 ENSMUSG00000007850 83.08 863.16 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
95. Fkbp4 ENSMUSG00000030357 81.67 848.51 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
96. Hnrnpa1 ENSMUSG00000046434 81.67 848.51 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
97. Txn1 ENSMUSG00000028367 80.27 833.96 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
98. Ldha ENSMUSG00000063229 77.45 804.66 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
99. Srsf3 ENSMUSG00000071172 77.45 804.66 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
100. Ywhaz ENSMUSG00000022285 77.45 804.66 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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