Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s35.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3940.71 40939.81 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3622.24 37631.25 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 3060.91 31799.62 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Co2 ENSMUSG00000064354 2317.59 24077.31 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. Ptma ENSMUSG00000026238 2100.15 21818.34 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 2031.24 21102.44 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Rnr1 ENSMUSG00000064337 1828.52 18996.39 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
8. mt-Nd2 ENSMUSG00000064345 1439.13 14951.04 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1437.12 14930.16 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd4 ENSMUSG00000064363 1382.26 14360.22 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 1230.38 12782.35 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 1019.63 10592.88 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 707.19 7346.96 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 683.10 7096.69 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Mdk ENSMUSG00000027239 558.66 5803.89 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Igf2 ENSMUSG00000048583 439.57 4566.67 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Co3 ENSMUSG00000064358 402.77 4184.35 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Rpsa ENSMUSG00000032518 371.32 3857.62 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. H19 ENSMUSG00000000031 369.98 3843.70 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
20. Npm1 ENSMUSG00000057113 337.20 3503.15 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Hmga2 ENSMUSG00000056758 302.41 3141.72 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Hsp90ab1 ENSMUSG00000023944 209.41 2175.55 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Nedd4 ENSMUSG00000032216 206.07 2140.85 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Gm13340 ENSMUSG00000083563 204.06 2119.97 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
25. Rps3a1 ENSMUSG00000028081 200.72 2085.27 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
26. Eif5a ENSMUSG00000078812 194.02 2015.66 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
27. Rpl23 ENSMUSG00000071415 192.02 1994.88 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
28. Tubb5 ENSMUSG00000001525 188.67 1960.08 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Peg3 ENSMUSG00000002265 187.33 1946.16 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
30. Ybx1 ENSMUSG00000028639 183.99 1911.46 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
31. Cfl1 ENSMUSG00000056201 176.63 1835.00 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Rps20 ENSMUSG00000028234 171.95 1786.38 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
33. Eef1b2 ENSMUSG00000025967 164.59 1709.92 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Eif4g2 ENSMUSG00000005610 161.24 1675.11 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Tuba1b ENSMUSG00000023004 159.90 1661.19 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
36. Hmgn1 ENSMUSG00000040681 155.89 1619.53 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
37. Chchd2 ENSMUSG00000070493 155.22 1612.57 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Pbx1 ENSMUSG00000052534 153.21 1591.69 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
39. Hsp90aa1 ENSMUSG00000021270 146.52 1522.19 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
40. Wbp5 143.18 1487.49 WW domain binding protein 5
41. Hbb-y ENSMUSG00000052187 141.84 1473.57 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
42. Rpl4 ENSMUSG00000032399 138.49 1438.76 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Tpt1 ENSMUSG00000060126 138.49 1438.76 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
44. Rps4x ENSMUSG00000031320 137.16 1424.95 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
45. Pkm ENSMUSG00000032294 130.46 1355.34 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
46. Malat1 ENSMUSG00000092341 129.80 1348.48 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
47. Pcbp1 ENSMUSG00000051695 129.13 1341.52 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
48. Atp5g3 ENSMUSG00000018770 127.79 1327.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Grb10 ENSMUSG00000020176 127.12 1320.64 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
50. Ran ENSMUSG00000029430 126.45 1313.68 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
51. Gm10800 ENSMUSG00000075014 125.78 1306.72 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
52. Hnrnpc ENSMUSG00000060373 124.44 1292.80 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
53. Rps26 ENSMUSG00000025362 121.10 1258.10 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Ngfrap1 120.43 1251.14 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
55. Rpl32 ENSMUSG00000057841 119.76 1244.18 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
56. Ubb ENSMUSG00000019505 119.76 1244.18 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
57. Rplp1 ENSMUSG00000007892 119.09 1237.22 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
58. Son ENSMUSG00000022961 118.42 1230.26 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
59. Marcks ENSMUSG00000069662 115.75 1202.52 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
60. Meg3 ENSMUSG00000021268 114.41 1188.60 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
61. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 113.74 1181.64 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
62. Gm17132 ENSMUSG00000061331 109.72 1139.87 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
63. Rpl39-ps ENSMUSG00000036305 106.38 1105.18 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
64. Set ENSMUSG00000054766 106.38 1105.18 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
65. Pabpc1 ENSMUSG00000022283 105.71 1098.22 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 105.04 1091.25 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
67. Rpl37 ENSMUSG00000041841 103.70 1077.33 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
68. Rps5 ENSMUSG00000012848 101.70 1056.56 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Ywhab ENSMUSG00000018326 101.70 1056.56 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
70. Crabp1 ENSMUSG00000032291 101.03 1049.59 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
71. Hnrnpa2b1 ENSMUSG00000004980 99.69 1035.67 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
72. 2810417H13Rik 93.67 973.13 RIKEN cDNA 2810417H13 gene
73. Eef2 ENSMUSG00000034994 93.67 973.13 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
74. Marcksl1 ENSMUSG00000047945 93.67 973.13 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
75. Anp32b ENSMUSG00000028333 91.66 952.25 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
76. Hnrnph1 ENSMUSG00000007850 89.65 931.37 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
77. Rpl8 ENSMUSG00000003970 88.31 917.45 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
78. Ago2 ENSMUSG00000036698 87.65 910.59 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
79. Col1a1 ENSMUSG00000001506 87.65 910.59 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
80. Rrm2 ENSMUSG00000020649 87.65 910.59 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
81. Gm14586 ENSMUSG00000083621 86.31 896.67 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
82. Banf1 ENSMUSG00000024844 85.64 889.71 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
83. H3f3b ENSMUSG00000016559 85.64 889.71 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
84. Nisch ENSMUSG00000021910 83.63 868.83 nischarin [Source:MGI Symbol;Acc:MGI:1928323]
85. Sub1 ENSMUSG00000022205 81.62 847.95 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
86. Tmpo ENSMUSG00000019961 81.62 847.95 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
87. Rpl18a ENSMUSG00000045128 80.96 841.09 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
88. U2af2 ENSMUSG00000030435 80.96 841.09 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
89. Ddx5 ENSMUSG00000020719 80.29 834.13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
90. Hnrnpa0 ENSMUSG00000007836 80.29 834.13 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
91. Rps9 ENSMUSG00000006333 80.29 834.13 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
92. Sfrp1 ENSMUSG00000031548 79.62 827.17 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
93. Tmsb4x ENSMUSG00000049775 77.61 806.29 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
94. Trim28 ENSMUSG00000005566 77.61 806.29 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
95. Ywhae ENSMUSG00000020849 77.61 806.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
96. Col3a1 ENSMUSG00000026043 76.94 799.33 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
97. Nucks1 ENSMUSG00000026434 76.94 799.33 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
98. Rpl7 ENSMUSG00000043716 76.94 799.33 ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
99. Txn1 ENSMUSG00000028367 76.94 799.33 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
100. Paics ENSMUSG00000029247 76.27 792.36 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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