Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s34.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 6016.82 62515.77 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2948.35 30633.85 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2829.94 29403.55 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Rnr1 ENSMUSG00000064337 2025.77 21048.09 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
5. Ptma ENSMUSG00000026238 1828.98 19003.41 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Co2 ENSMUSG00000064354 1708.87 17755.45 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1412.41 14675.18 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Nd2 ENSMUSG00000064345 1407.30 14622.08 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1329.78 13816.64 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 1271.00 13205.90 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 1194.33 12409.29 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 765.84 7957.21 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 725.80 7541.18 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Igf2 ENSMUSG00000048583 580.13 6027.65 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Eef1a1 ENSMUSG00000037742 574.17 5965.72 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Mdk ENSMUSG00000027239 510.28 5301.90 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. mt-Co3 ENSMUSG00000064358 503.46 5231.03 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. H19 ENSMUSG00000000031 442.98 4602.64 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Rpsa ENSMUSG00000032518 331.38 3443.09 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Hmga2 ENSMUSG00000056758 320.31 3328.07 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Npm1 ENSMUSG00000057113 242.79 2522.63 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Peg3 ENSMUSG00000002265 233.41 2425.17 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
23. Nedd4 ENSMUSG00000032216 222.34 2310.15 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Ybx1 ENSMUSG00000028639 218.08 2265.89 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
25. Malat1 ENSMUSG00000092341 217.23 2257.06 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
26. Hsp90ab1 ENSMUSG00000023944 213.82 2221.63 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Tubb5 ENSMUSG00000001525 202.75 2106.61 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Eif5a ENSMUSG00000078812 201.90 2097.78 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
29. Tuba1b ENSMUSG00000023004 187.41 1947.22 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Rpl23 ENSMUSG00000071415 170.38 1770.28 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. Rps3a1 ENSMUSG00000028081 166.12 1726.01 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
32. Gm13340 ENSMUSG00000083563 165.26 1717.08 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Ran ENSMUSG00000029430 165.26 1717.08 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
34. Set ENSMUSG00000054766 163.56 1699.42 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
35. Chchd2 ENSMUSG00000070493 158.45 1646.32 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
36. Rpl32 ENSMUSG00000057841 146.52 1522.37 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
37. Eif4g2 ENSMUSG00000005610 145.67 1513.54 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Gm17132 ENSMUSG00000061331 145.67 1513.54 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
39. Pkm ENSMUSG00000032294 145.67 1513.54 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
40. Gm10800 ENSMUSG00000075014 143.97 1495.87 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
41. Rpl4 ENSMUSG00000032399 140.56 1460.44 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Eef1b2 ENSMUSG00000025967 139.71 1451.61 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
43. Atp5g3 ENSMUSG00000018770 138.86 1442.78 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Rps20 ENSMUSG00000028234 135.45 1407.35 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Cfl1 ENSMUSG00000056201 134.60 1398.52 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
46. Tpt1 ENSMUSG00000060126 126.93 1318.82 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
47. Pcbp1 ENSMUSG00000051695 126.08 1309.99 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
48. Pbx1 ENSMUSG00000052534 125.23 1301.16 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
49. Ubb ENSMUSG00000019505 122.67 1274.56 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
50. Rps26 ENSMUSG00000025362 119.26 1239.13 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Meg3 ENSMUSG00000021268 115.86 1203.80 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
52. Col1a1 ENSMUSG00000001506 115.00 1194.87 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
53. Rps4x ENSMUSG00000031320 115.00 1194.87 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
54. Wbp5 114.15 1186.04 WW domain binding protein 5
55. Marcksl1 ENSMUSG00000047945 110.74 1150.61 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
56. Hsp90aa1 ENSMUSG00000021270 109.89 1141.78 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. Son ENSMUSG00000022961 109.04 1132.94 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
58. Grb10 ENSMUSG00000020176 105.63 1097.51 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
59. Ngfrap1 104.78 1088.68 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
60. Pabpc1 ENSMUSG00000022283 104.78 1088.68 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
61. Anp32b ENSMUSG00000028333 102.23 1062.19 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
62. Rplp1 ENSMUSG00000007892 102.23 1062.19 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
63. Hnrnpa2b1 ENSMUSG00000004980 101.37 1053.25 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
64. Hnrnpc ENSMUSG00000060373 98.82 1026.76 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
65. 2810417H13Rik 97.97 1017.92 RIKEN cDNA 2810417H13 gene
66. Hmgn1 ENSMUSG00000040681 96.26 1000.16 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
67. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 96.26 1000.16 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
68. Ywhab ENSMUSG00000018326 95.41 991.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
69. Marcks ENSMUSG00000069662 94.56 982.49 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
70. Col3a1 ENSMUSG00000026043 92.85 964.73 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
71. Eef2 ENSMUSG00000034994 92.00 955.90 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
72. Rps9 ENSMUSG00000006333 87.74 911.63 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
73. Crabp1 ENSMUSG00000032291 86.89 902.80 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
74. Trim28 ENSMUSG00000005566 86.89 902.80 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
75. Rpl39-ps ENSMUSG00000036305 85.19 885.14 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
76. Gnb2l1 Gnb2l1 83.48 867.37
77. H3f3b ENSMUSG00000016559 83.48 867.37 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
78. Rps5 ENSMUSG00000012848 82.63 858.54 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
79. Mapre1 ENSMUSG00000027479 81.78 849.71 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
80. Ywhae ENSMUSG00000020849 81.78 849.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
81. Hnrnph1 ENSMUSG00000007850 80.93 840.88 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
82. Rpl37 ENSMUSG00000041841 80.93 840.88 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
83. Rpl13a ENSMUSG00000074129 79.22 823.11 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
84. Pfn1 ENSMUSG00000018293 78.37 814.28 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
85. Sfrp1 ENSMUSG00000031548 78.37 814.28 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
86. Rpl8 ENSMUSG00000003970 77.52 805.45 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
87. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 74.97 778.95 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
88. Ago2 ENSMUSG00000036698 74.11 770.02 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
89. Banf1 ENSMUSG00000024844 74.11 770.02 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
90. Gm14586 ENSMUSG00000083621 74.11 770.02 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
91. Nucks1 ENSMUSG00000026434 74.11 770.02 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
92. Serbp1 ENSMUSG00000036371 72.41 752.35 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
93. Gm14303 ENSMUSG00000081344 71.56 743.52 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
94. Sfpq ENSMUSG00000028820 71.56 743.52 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
95. Eef1g ENSMUSG00000071644 70.71 734.69 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
96. Tmsb4x ENSMUSG00000049775 70.71 734.69 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
97. Rbm25 ENSMUSG00000010608 69.85 725.75 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
98. Oaz1 ENSMUSG00000035242 68.15 708.09 ornithine decarboxylase antizyme 1 [Source:MGI Symbol;Acc:MGI:109433]
99. Rpl18a ENSMUSG00000045128 68.15 708.09 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
100. Paics ENSMUSG00000029247 66.45 690.43 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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