Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s33.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3804.10 39520.10 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3288.27 34161.24 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 3061.35 31803.81 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. Ptma ENSMUSG00000026238 1936.68 20119.81 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 1732.19 17995.41 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1567.95 16289.15 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1422.83 14781.52 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1188.00 12341.91 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd4 ENSMUSG00000064363 1186.02 12321.34 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Rnr1 ENSMUSG00000064337 929.42 9655.57 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
11. mt-Nd5 ENSMUSG00000064367 887.21 9217.06 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Actb ENSMUSG00000029580 790.90 8216.52 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 746.04 7750.47 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Eef1a1 ENSMUSG00000037742 684.70 7113.22 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Igf2 ENSMUSG00000048583 525.07 5454.86 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. H19 ENSMUSG00000000031 503.30 5228.69 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. Mdk ENSMUSG00000027239 459.10 4769.51 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. mt-Co3 ENSMUSG00000064358 447.23 4646.19 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Rpsa ENSMUSG00000032518 336.41 3494.90 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Hmga2 ENSMUSG00000056758 333.77 3467.48 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Hsp90ab1 ENSMUSG00000023944 286.94 2980.97 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
22. Npm1 ENSMUSG00000057113 279.68 2905.54 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Peg3 ENSMUSG00000002265 236.81 2460.18 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
24. Nedd4 ENSMUSG00000032216 201.85 2096.98 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Gm13340 ENSMUSG00000083563 199.87 2076.41 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
26. Rpl23 ENSMUSG00000071415 195.25 2028.42 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
27. Ybx1 ENSMUSG00000028639 193.27 2007.85 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
28. Tuba1b ENSMUSG00000023004 191.95 1994.13 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Malat1 ENSMUSG00000092341 190.63 1980.42 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
30. Eif5a ENSMUSG00000078812 182.06 1891.39 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
31. Chchd2 ENSMUSG00000070493 180.08 1870.82 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Tubb5 ENSMUSG00000001525 168.87 1754.36 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Pkm ENSMUSG00000032294 164.25 1706.36 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Set ENSMUSG00000054766 160.95 1672.08 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
35. Ran ENSMUSG00000029430 148.42 1541.91 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
36. Rps20 ENSMUSG00000028234 147.10 1528.19 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Cfl1 ENSMUSG00000056201 146.44 1521.34 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
38. Atp5g3 ENSMUSG00000018770 144.46 1500.77 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Tpt1 ENSMUSG00000060126 139.18 1445.92 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. 2810417H13Rik 135.22 1404.78 RIKEN cDNA 2810417H13 gene
41. Pbx1 ENSMUSG00000052534 131.93 1370.60 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
42. Rps3a1 ENSMUSG00000028081 131.93 1370.60 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
43. Ubb ENSMUSG00000019505 130.61 1356.88 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
44. Eif4g2 ENSMUSG00000005610 129.95 1350.03 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Hmgn1 ENSMUSG00000040681 129.29 1343.17 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
46. Rplp1 ENSMUSG00000007892 127.97 1329.46 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
47. Pabpc1 ENSMUSG00000022283 127.31 1322.60 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
48. Eef1b2 ENSMUSG00000025967 126.65 1315.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Hnrnpc ENSMUSG00000060373 125.99 1308.89 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Itga6 ENSMUSG00000027111 125.33 1302.03 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
51. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 124.01 1288.32 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
52. Rps4x ENSMUSG00000031320 123.35 1281.46 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Wbp5 123.35 1281.46 WW domain binding protein 5
54. Pcbp1 ENSMUSG00000051695 122.69 1274.60 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
55. Rpl4 ENSMUSG00000032399 118.73 1233.46 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
56. Rpl37 ENSMUSG00000041841 117.41 1219.75 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
57. Hsp90aa1 ENSMUSG00000021270 116.75 1212.89 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Hnrnpa2b1 ENSMUSG00000004980 115.44 1199.29 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
59. Ngfrap1 112.80 1171.86 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
60. Ywhab ENSMUSG00000018326 110.16 1144.43 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
61. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 109.50 1137.58 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
62. Rps5 ENSMUSG00000012848 107.52 1117.01 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
63. Son ENSMUSG00000022961 107.52 1117.01 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
64. U2af2 ENSMUSG00000030435 107.52 1117.01 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
65. Rpl32 ENSMUSG00000057841 102.24 1062.15 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
66. Meg3 ENSMUSG00000021268 100.92 1048.44 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
67. Rps26 ENSMUSG00000025362 100.92 1048.44 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
68. Eef2 ENSMUSG00000034994 100.26 1041.58 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
69. Gm17132 ENSMUSG00000061331 99.60 1034.73 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
70. Col3a1 ENSMUSG00000026043 98.94 1027.87 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
71. H3f3b ENSMUSG00000016559 95.65 993.69 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
72. Serbp1 ENSMUSG00000036371 95.65 993.69 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
73. Gm10800 ENSMUSG00000075014 93.01 966.26 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
74. Rpl18a ENSMUSG00000045128 92.35 959.41 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
75. Tmsb4x ENSMUSG00000049775 92.35 959.41 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
76. Rps9 ENSMUSG00000006333 91.03 945.69 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
77. Ago2 ENSMUSG00000036698 90.37 938.84 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
78. Rpl41 ENSMUSG00000093674 89.71 931.98 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
79. Ywhae ENSMUSG00000020849 89.05 925.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
80. Hnrnph1 ENSMUSG00000007850 88.39 918.27 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
81. Calm1 ENSMUSG00000001175 86.41 897.70 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
82. Col1a1 ENSMUSG00000001506 85.75 890.84 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
83. Rpl39-ps ENSMUSG00000036305 85.09 883.98 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
84. Ywhaz ENSMUSG00000022285 85.09 883.98 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
85. Gpc3 ENSMUSG00000055653 84.43 877.13 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
86. Anp32b ENSMUSG00000028333 83.11 863.41 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
87. Grb10 ENSMUSG00000020176 82.45 856.56 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
88. Trim28 ENSMUSG00000005566 82.45 856.56 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
89. Marcks ENSMUSG00000069662 81.13 842.84 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
90. Gm14303 ENSMUSG00000081344 80.48 836.09 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
91. Gnb2l1 Gnb2l1 80.48 836.09
92. Marcksl1 ENSMUSG00000047945 80.48 836.09 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
93. Gm14586 ENSMUSG00000083621 79.82 829.24 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
94. Nasp ENSMUSG00000028693 78.50 815.52 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
95. Tmpo ENSMUSG00000019961 78.50 815.52 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
96. Wt1 ENSMUSG00000016458 78.50 815.52 Wilms tumor 1 homolog [Source:MGI Symbol;Acc:MGI:98968]
97. Srsf3 ENSMUSG00000071172 77.84 808.67 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
98. Top1 ENSMUSG00000070544 77.84 808.67 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
99. Banf1 ENSMUSG00000024844 76.52 794.95 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
100. Rrm2 ENSMUSG00000020649 76.52 794.95 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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