Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s32.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5446.22 56581.36 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3323.13 34524.35 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 3139.86 32620.34 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. Ptma ENSMUSG00000026238 1669.93 17349.08 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 1654.03 17183.90 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1428.50 14840.84 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1343.98 13962.75 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1317.20 13684.53 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1100.46 11432.80 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Nd4 ENSMUSG00000064363 1066.98 11084.97 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Rnr1 ENSMUSG00000064337 974.93 10128.65 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
12. Actb ENSMUSG00000029580 837.69 8702.85 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 756.51 7859.46 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Eef1a1 ENSMUSG00000037742 591.65 6146.72 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. H19 ENSMUSG00000000031 511.32 5312.16 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Igf2 ENSMUSG00000048583 505.46 5251.28 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Mdk ENSMUSG00000027239 462.36 4803.51 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. mt-Co3 ENSMUSG00000064358 410.89 4268.78 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Hmga2 ENSMUSG00000056758 389.97 4051.44 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Rpsa ENSMUSG00000032518 341.43 3547.15 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Hsp90ab1 ENSMUSG00000023944 309.22 3212.52 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
22. Npm1 ENSMUSG00000057113 244.78 2543.05 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Peg3 ENSMUSG00000002265 228.88 2377.86 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
24. Nedd4 ENSMUSG00000032216 213.82 2221.40 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tubb5 ENSMUSG00000001525 191.22 1986.61 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Ybx1 ENSMUSG00000028639 186.20 1934.45 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
27. Gm13340 ENSMUSG00000083563 184.53 1917.10 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
28. Rpl23 ENSMUSG00000071415 178.25 1851.86 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
29. Set ENSMUSG00000054766 175.32 1821.42 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
30. Malat1 ENSMUSG00000092341 174.48 1812.69 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
31. Cfl1 ENSMUSG00000056201 168.63 1751.92 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Pkm ENSMUSG00000032294 166.95 1734.46 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Tuba1b ENSMUSG00000023004 157.33 1634.52 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
34. Ran ENSMUSG00000029430 153.14 1590.99 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
35. Eif5a ENSMUSG00000078812 151.89 1578.00 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Chchd2 ENSMUSG00000070493 148.12 1538.83 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Atp5g3 ENSMUSG00000018770 141.01 1464.97 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Rpl4 ENSMUSG00000032399 138.50 1438.89 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Rps3a1 ENSMUSG00000028081 135.57 1408.45 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
40. Tpt1 ENSMUSG00000060126 135.57 1408.45 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Rps20 ENSMUSG00000028234 132.22 1373.65 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Pbx1 ENSMUSG00000052534 128.87 1338.84 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
43. Ubb ENSMUSG00000019505 128.04 1330.22 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
44. Hsp90aa1 ENSMUSG00000021270 125.11 1299.78 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Pabpc1 ENSMUSG00000022283 123.85 1286.69 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
46. Eef1b2 ENSMUSG00000025967 119.25 1238.90 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Eif4g2 ENSMUSG00000005610 119.25 1238.90 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
48. Hmgn1 ENSMUSG00000040681 119.25 1238.90 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
49. 2810417H13Rik 115.07 1195.47 RIKEN cDNA 2810417H13 gene
50. Son ENSMUSG00000022961 115.07 1195.47 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
51. Hbb-y ENSMUSG00000052187 112.14 1165.03 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
52. Rps4x ENSMUSG00000031320 112.14 1165.03 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Rpl32 ENSMUSG00000057841 110.88 1151.94 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
54. Rps26 ENSMUSG00000025362 106.70 1108.52 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Ngfrap1 106.28 1104.15 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
56. Meg3 ENSMUSG00000021268 105.86 1099.79 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
57. Hnrnpc ENSMUSG00000060373 104.61 1086.80 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
58. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 104.61 1086.80 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
59. Pcbp1 ENSMUSG00000051695 104.19 1082.44 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
60. Wbp5 102.10 1060.73 WW domain binding protein 5
61. Rplp1 ENSMUSG00000007892 101.68 1056.36 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
62. Hnrnpa2b1 ENSMUSG00000004980 100.42 1043.27 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
63. Gm17132 ENSMUSG00000061331 99.17 1030.29 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
64. Ywhab ENSMUSG00000018326 97.91 1017.20 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
65. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.82 995.48 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
66. Itga6 ENSMUSG00000027111 91.64 952.06 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
67. H3f3b ENSMUSG00000016559 91.22 947.69 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
68. Col1a1 ENSMUSG00000001506 90.38 938.97 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
69. Anp32b ENSMUSG00000028333 89.54 930.24 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
70. U2af2 ENSMUSG00000030435 89.12 925.88 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
71. Rpl37 ENSMUSG00000041841 88.71 921.62 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
72. Rps5 ENSMUSG00000012848 87.87 912.89 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
73. Top1 ENSMUSG00000070544 87.87 912.89 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
74. Gpc3 ENSMUSG00000055653 87.45 908.53 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
75. Ywhae ENSMUSG00000020849 87.03 904.16 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
76. Marcksl1 ENSMUSG00000047945 86.20 895.54 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
77. Eef2 ENSMUSG00000034994 85.78 891.18 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
78. Rpl8 ENSMUSG00000003970 85.78 891.18 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
79. Banf1 ENSMUSG00000024844 85.36 886.81 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
80. Nucks1 ENSMUSG00000026434 84.94 882.45 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
81. Gm10800 ENSMUSG00000075014 84.52 878.09 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
82. Grb10 ENSMUSG00000020176 83.68 869.36 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
83. Gm14586 ENSMUSG00000083621 83.27 865.10 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
84. Tmsb4x ENSMUSG00000049775 81.59 847.65 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
85. Rps9 ENSMUSG00000006333 80.76 839.02 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
86. Rpl41 ENSMUSG00000093674 80.34 834.66 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
87. Serbp1 ENSMUSG00000036371 80.34 834.66 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
88. Marcks ENSMUSG00000069662 79.92 830.30 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
89. Trim28 ENSMUSG00000005566 79.92 830.30 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
90. Hnrnph1 ENSMUSG00000007850 79.08 821.57 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
91. Rpl39-ps ENSMUSG00000036305 77.83 808.58 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
92. Rrm2 ENSMUSG00000020649 76.15 791.13 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
93. Gm26924 Gm26924 75.73 786.77
94. Srsf3 ENSMUSG00000071172 74.90 778.14 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
95. Tmsb10 ENSMUSG00000079523 74.90 778.14 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
96. Col3a1 ENSMUSG00000026043 74.06 769.42 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
97. Ywhaz ENSMUSG00000022285 73.64 765.05 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
98. Gas1 ENSMUSG00000052957 73.22 760.69 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
99. Paics ENSMUSG00000029247 71.55 743.34 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
100. Myl6 ENSMUSG00000090841 71.13 738.98 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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