Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s30.

Sample reads: 96,259. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 6266.25 65098.21 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2920.86 30343.95 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2576.62 26767.74 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Rnr1 ENSMUSG00000064337 1914.13 19885.33 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
5. Ptma ENSMUSG00000026238 1858.68 19309.28 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Co2 ENSMUSG00000064354 1759.91 18283.18 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1404.69 14592.91 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Nd2 ENSMUSG00000064345 1317.48 13686.91 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1273.00 13224.82 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 1208.31 12552.77 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 1058.14 10992.70 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. mt-Nd3 ENSMUSG00000064360 806.89 8382.54 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 707.55 7350.53 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Igf2 ENSMUSG00000048583 591.45 6144.40 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Eef1a1 ENSMUSG00000037742 568.35 5904.42 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Mdk ENSMUSG00000027239 534.27 5550.37 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. H19 ENSMUSG00000000031 521.56 5418.33 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. mt-Co3 ENSMUSG00000064358 404.31 4200.26 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Hmga2 ENSMUSG00000056758 347.13 3606.23 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Rpsa ENSMUSG00000032518 329.23 3420.27 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Npm1 ENSMUSG00000057113 260.49 2706.15 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Hsp90ab1 ENSMUSG00000023944 251.25 2610.16 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Nedd4 ENSMUSG00000032216 232.19 2412.15 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Ybx1 ENSMUSG00000028639 221.22 2298.19 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
25. Malat1 ENSMUSG00000092341 210.24 2184.12 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
26. Tubb5 ENSMUSG00000001525 207.93 2160.12 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Cfl1 ENSMUSG00000056201 185.98 1932.09 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Eif5a ENSMUSG00000078812 180.21 1872.15 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
29. Peg3 ENSMUSG00000002265 179.05 1860.10 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
30. Gm13340 ENSMUSG00000083563 176.74 1836.10 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
31. Rpl23 ENSMUSG00000071415 175.01 1818.13 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
32. Tuba1b ENSMUSG00000023004 169.81 1764.11 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
33. Chchd2 ENSMUSG00000070493 164.61 1710.08 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Hbb-y ENSMUSG00000052187 161.15 1674.14 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
35. Set ENSMUSG00000054766 159.99 1662.09 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Ubb ENSMUSG00000019505 155.37 1614.09 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
37. Tpt1 ENSMUSG00000060126 151.33 1572.12 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Ran ENSMUSG00000029430 149.60 1554.15 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
39. Rps3a1 ENSMUSG00000028081 143.82 1494.10 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
40. Eef1b2 ENSMUSG00000025967 142.09 1476.13 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
41. Pbx1 ENSMUSG00000052534 141.51 1470.11 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
42. Pkm ENSMUSG00000032294 140.93 1464.08 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
43. Atp5g3 ENSMUSG00000018770 138.62 1440.08 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Eif4g2 ENSMUSG00000005610 136.89 1422.11 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Pabpc1 ENSMUSG00000022283 136.89 1422.11 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
46. Rps20 ENSMUSG00000028234 134.58 1398.11 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Rplp1 ENSMUSG00000007892 132.27 1374.11 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
48. Hmgn1 ENSMUSG00000040681 123.03 1278.12 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
49. Rpl32 ENSMUSG00000057841 118.41 1230.13 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
50. Hsp90aa1 ENSMUSG00000021270 117.25 1218.08 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Rps4x ENSMUSG00000031320 114.94 1194.08 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
52. Rpl4 ENSMUSG00000032399 113.21 1176.11 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
53. Marcksl1 ENSMUSG00000047945 112.05 1164.05 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
54. Pcbp1 ENSMUSG00000051695 112.05 1164.05 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
55. Rps26 ENSMUSG00000025362 106.28 1104.11 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
56. Son ENSMUSG00000022961 105.70 1098.09 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
57. Gm17132 ENSMUSG00000061331 103.39 1074.09 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
58. Anp32b ENSMUSG00000028333 102.23 1062.04 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
59. Hnrnpc ENSMUSG00000060373 102.23 1062.04 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Wbp5 102.23 1062.04 WW domain binding protein 5
61. 2810417H13Rik 101.08 1050.09 RIKEN cDNA 2810417H13 gene
62. Gm10800 ENSMUSG00000075014 98.77 1026.09 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
63. Rpl39-ps ENSMUSG00000036305 97.61 1014.04 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
64. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 97.03 1008.02 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
65. Gm26924 Gm26924 96.46 1002.09
66. Eef2 ENSMUSG00000034994 93.57 972.07 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
67. Ywhab ENSMUSG00000018326 91.26 948.07 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
68. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 90.68 942.05 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
69. Grb10 ENSMUSG00000020176 89.53 930.10 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
70. Hnrnpa2b1 ENSMUSG00000004980 88.95 924.08 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
71. Tmsb4x ENSMUSG00000049775 88.95 924.08 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
72. Rrm2 ENSMUSG00000020649 88.37 918.05 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
73. H3f3b ENSMUSG00000016559 86.64 900.08 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
74. Marcks ENSMUSG00000069662 86.64 900.08 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
75. Serbp1 ENSMUSG00000036371 86.64 900.08 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
76. Meg3 ENSMUSG00000021268 84.91 882.10 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
77. Rps5 ENSMUSG00000012848 84.91 882.10 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
78. Ywhae ENSMUSG00000020849 84.91 882.10 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
79. Paics ENSMUSG00000029247 83.75 870.05 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
80. Banf1 ENSMUSG00000024844 82.60 858.11 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
81. Gm14586 ENSMUSG00000083621 78.55 816.03 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
82. Tsc22d1 ENSMUSG00000022010 78.55 816.03 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
83. Hnrnph1 ENSMUSG00000007850 77.97 810.01 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
84. Rpl37 ENSMUSG00000041841 77.97 810.01 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
85. Rpl8 ENSMUSG00000003970 77.97 810.01 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
86. Ngfrap1 77.40 804.09 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
87. Ago2 ENSMUSG00000036698 76.24 792.03 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
88. Nucks1 ENSMUSG00000026434 76.24 792.03 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
89. Rpl26 ENSMUSG00000060938 76.24 792.03 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
90. Top1 ENSMUSG00000070544 74.51 774.06 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
91. Eef1g ENSMUSG00000071644 73.93 768.04 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
92. Sfpq ENSMUSG00000028820 73.35 762.01 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
93. Trim28 ENSMUSG00000005566 73.35 762.01 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. Rps9 ENSMUSG00000006333 72.78 756.09 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
95. Fscn1 ENSMUSG00000029581 72.20 750.06 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
96. Gpc3 ENSMUSG00000055653 72.20 750.06 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
97. Sub1 ENSMUSG00000022205 72.20 750.06 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
98. U2af2 ENSMUSG00000030435 72.20 750.06 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
99. Gm14303 ENSMUSG00000081344 71.04 738.01 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
100. Rpl18a ENSMUSG00000045128 71.04 738.01 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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