Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s29.

Sample reads: 96,224. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Atp6 ENSMUSG00000064357 3403.68 35372.99 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
2. mt-Cytb ENSMUSG00000064370 3307.07 34368.96 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 3061.90 31821.01 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. Ptma ENSMUSG00000026238 2528.04 26272.84 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 1726.41 17941.84 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1687.43 17536.74 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1528.12 15881.10 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1311.19 13626.64 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd4 ENSMUSG00000064363 1256.96 13063.05 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Rnr1 ENSMUSG00000064337 1126.46 11706.82 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
11. Actb ENSMUSG00000029580 871.12 9053.18 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd5 ENSMUSG00000064367 786.94 8178.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. mt-Nd3 ENSMUSG00000064360 760.95 7908.23 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. H19 ENSMUSG00000000031 603.34 6270.25 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Eef1a1 ENSMUSG00000037742 601.08 6246.77 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 571.70 5941.43 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Mdk ENSMUSG00000027239 492.62 5119.59 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. mt-Co3 ENSMUSG00000064358 457.02 4749.61 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Hmga2 ENSMUSG00000056758 387.54 4027.54 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Rpsa ENSMUSG00000032518 343.47 3569.54 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Hsp90ab1 ENSMUSG00000023944 302.24 3141.05 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
22. Npm1 ENSMUSG00000057113 266.08 2765.26 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Gm13340 ENSMUSG00000083563 224.84 2336.67 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Ybx1 ENSMUSG00000028639 215.80 2242.72 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
25. Set ENSMUSG00000054766 215.24 2236.90 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Nedd4 ENSMUSG00000032216 207.89 2160.51 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Eif5a ENSMUSG00000078812 195.46 2031.33 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
28. Tubb5 ENSMUSG00000001525 192.07 1996.10 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Rpl23 ENSMUSG00000071415 188.69 1960.97 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
30. Hbb-y ENSMUSG00000052187 184.17 1914.00 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
31. Peg3 ENSMUSG00000002265 183.60 1908.08 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. Pkm ENSMUSG00000032294 176.26 1831.79 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Cfl1 ENSMUSG00000056201 173.43 1802.38 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
34. Pbx1 ENSMUSG00000052534 169.48 1761.33 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
35. Tuba1b ENSMUSG00000023004 163.26 1696.69 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
36. Rps20 ENSMUSG00000028234 162.70 1690.87 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Rps4x ENSMUSG00000031320 152.53 1585.18 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
38. Atp5g3 ENSMUSG00000018770 151.96 1579.26 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Ran ENSMUSG00000029430 145.19 1508.90 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
40. Tpt1 ENSMUSG00000060126 145.19 1508.90 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Eif4g2 ENSMUSG00000005610 144.06 1497.15 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. Ubb ENSMUSG00000019505 144.06 1497.15 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
43. Eef1b2 ENSMUSG00000025967 142.93 1485.41 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Rps3a1 ENSMUSG00000028081 141.80 1473.67 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
45. Chchd2 ENSMUSG00000070493 140.10 1456.00 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Malat1 ENSMUSG00000092341 131.06 1362.05 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
47. Ywhab ENSMUSG00000018326 129.93 1350.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
48. Rps26 ENSMUSG00000025362 128.80 1338.56 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Pcbp1 ENSMUSG00000051695 125.41 1303.33 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
50. Rpl32 ENSMUSG00000057841 124.85 1297.51 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
51. 2810417H13Rik 123.15 1279.85 RIKEN cDNA 2810417H13 gene
52. Pabpc1 ENSMUSG00000022283 120.33 1250.54 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
53. Rplp1 ENSMUSG00000007892 115.81 1203.56 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. Hmgn1 ENSMUSG00000040681 115.24 1197.64 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
55. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 112.99 1174.26 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
56. Rps5 ENSMUSG00000012848 112.42 1168.33 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
57. Eef2 ENSMUSG00000034994 110.16 1144.85 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
58. H3f3b ENSMUSG00000016559 108.47 1127.28 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
59. Rpl37 ENSMUSG00000041841 107.90 1121.36 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
60. Meg3 ENSMUSG00000021268 107.34 1115.54 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
61. Banf1 ENSMUSG00000024844 105.64 1097.87 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
62. Marcksl1 ENSMUSG00000047945 105.64 1097.87 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
63. Hsp90aa1 ENSMUSG00000021270 105.08 1092.05 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
64. Rpl4 ENSMUSG00000032399 101.69 1056.82 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
65. Anp32b ENSMUSG00000028333 101.12 1050.90 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
66. Son ENSMUSG00000022961 100.56 1045.08 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
67. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.99 1039.15 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
68. U2af2 ENSMUSG00000030435 99.99 1039.15 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
69. Gm14303 ENSMUSG00000081344 99.43 1033.33 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
70. Fkbp1a ENSMUSG00000032966 98.86 1027.41 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
71. Gpc3 ENSMUSG00000055653 97.73 1015.67 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
72. Hnrnpc ENSMUSG00000060373 97.73 1015.67 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
73. Rrm2 ENSMUSG00000020649 96.04 998.10 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
74. Rpl41 ENSMUSG00000093674 95.47 992.18 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
75. Rps9 ENSMUSG00000006333 95.47 992.18 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
76. Wbp5 94.91 986.36 WW domain binding protein 5
77. Rpl8 ENSMUSG00000003970 93.78 974.62 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
78. Trim28 ENSMUSG00000005566 93.21 968.69 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
79. Gm14586 ENSMUSG00000083621 92.08 956.95 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
80. Marcks ENSMUSG00000069662 89.82 933.46 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
81. Tmsb4x ENSMUSG00000049775 89.82 933.46 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
82. Paics ENSMUSG00000029247 89.26 927.64 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
83. Ywhae ENSMUSG00000020849 88.13 915.90 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. Nucks1 ENSMUSG00000026434 87.00 904.15 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
85. Rpl26 ENSMUSG00000060938 87.00 904.15 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
86. Top1 ENSMUSG00000070544 87.00 904.15 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
87. Ngfrap1 85.87 892.41 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
88. Serbp1 ENSMUSG00000036371 85.87 892.41 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
89. Hnrnpa2b1 ENSMUSG00000004980 82.48 857.18 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
90. Rpl18a ENSMUSG00000045128 81.91 851.26 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
91. Grb10 ENSMUSG00000020176 80.78 839.51 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
92. Hnrnph1 ENSMUSG00000007850 79.65 827.77 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
93. Nasp ENSMUSG00000028693 77.39 804.28 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
94. Nisch ENSMUSG00000021910 77.39 804.28 nischarin [Source:MGI Symbol;Acc:MGI:1928323]
95. Col3a1 ENSMUSG00000026043 76.26 792.54 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
96. Tsc22d1 ENSMUSG00000022010 76.26 792.54 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
97. Tmsb10 ENSMUSG00000079523 75.14 780.90 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
98. Ago2 ENSMUSG00000036698 74.57 774.97 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
99. Srsf3 ENSMUSG00000071172 74.57 774.97 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
100. Hnrnpa0 ENSMUSG00000007836 73.44 763.23 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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