Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s28.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4298.86 44663.58 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Rnr2 ENSMUSG00000064339 2989.51 31059.92 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Nd4 ENSMUSG00000064363 2277.78 23665.30 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2184.07 22691.69 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd2 ENSMUSG00000064345 1673.36 17385.60 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
6. mt-Nd1 ENSMUSG00000064341 1423.45 14789.12 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co2 ENSMUSG00000064354 1191.18 12375.92 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Co3 ENSMUSG00000064358 1109.69 11529.27 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
9. mt-Co1 ENSMUSG00000064351 1083.88 11261.12 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Mdk ENSMUSG00000027239 838.04 8706.93 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Nd5 ENSMUSG00000064367 820.38 8523.45 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Gm13340 ENSMUSG00000083563 622.08 6463.18 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
13. H19 ENSMUSG00000000031 498.48 5179.02 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. mt-Nd3 ENSMUSG00000064360 498.48 5179.02 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Ptma ENSMUSG00000026238 465.88 4840.32 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
16. mt-Rnr1 ENSMUSG00000064337 460.45 4783.91 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
17. Tuba1b ENSMUSG00000023004 438.71 4558.04 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
18. Eef1a1 ENSMUSG00000037742 384.38 3993.57 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Pkm ENSMUSG00000032294 384.38 3993.57 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Rpl4 ENSMUSG00000032399 358.58 3725.52 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
21. Igf2 ENSMUSG00000048583 345.00 3584.42 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Hmga2 ENSMUSG00000056758 343.64 3570.29 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Tpt1 ENSMUSG00000060126 330.05 3429.10 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
24. Rpl23 ENSMUSG00000071415 315.11 3273.88 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
25. Npm1 ENSMUSG00000057113 302.89 3146.92 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Hsp90ab1 ENSMUSG00000023944 258.07 2681.25 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Tubb5 ENSMUSG00000001525 240.41 2497.77 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Gm8292 ENSMUSG00000100215 237.69 2469.51 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
29. Hbb-y ENSMUSG00000052187 230.90 2398.97 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
30. Paics ENSMUSG00000029247 229.54 2384.84 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
31. Chchd2 ENSMUSG00000070493 226.83 2356.68 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Rps20 ENSMUSG00000028234 226.83 2356.68 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
33. Rpl37 ENSMUSG00000041841 222.75 2314.29 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
34. Hsp90aa1 ENSMUSG00000021270 221.39 2300.16 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
35. Cfl1 ENSMUSG00000056201 214.60 2229.62 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
36. Gm10800 ENSMUSG00000075014 214.60 2229.62 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
37. Ubb ENSMUSG00000019505 209.17 2173.20 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
38. Gm14303 ENSMUSG00000081344 206.45 2144.94 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
39. Rpl32 ENSMUSG00000057841 205.10 2130.91 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
40. Atp5g3 ENSMUSG00000018770 192.87 2003.85 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
41. Rpl41 ENSMUSG00000093674 188.80 1961.56 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
42. Rps9 ENSMUSG00000006333 179.29 1862.76 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
43. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 177.93 1848.63 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
44. Eif4g2 ENSMUSG00000005610 175.21 1820.37 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Rps26 ENSMUSG00000025362 175.21 1820.37 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Eef1b2 ENSMUSG00000025967 173.86 1806.34 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Hbb-bh1 ENSMUSG00000052217 168.42 1749.82 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
48. Actb ENSMUSG00000029580 164.35 1707.54 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
49. Rpl18a ENSMUSG00000045128 162.99 1693.41 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
50. Rps4x ENSMUSG00000031320 143.97 1495.80 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
51. Peg3 ENSMUSG00000002265 142.62 1481.77 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
52. Gm5963 ENSMUSG00000052192 138.54 1439.38 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
53. Ran ENSMUSG00000029430 138.54 1439.38 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Cdkn1c ENSMUSG00000037664 135.82 1411.12 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
55. Rpl22 ENSMUSG00000028936 135.82 1411.12 ribosomal protein L22 [Source:MGI Symbol;Acc:MGI:99262]
56. Ddx39b ENSMUSG00000019432 134.47 1397.09 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
57. Ywhae ENSMUSG00000020849 131.75 1368.83 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
58. Hnrnpk ENSMUSG00000021546 126.32 1312.42 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
59. Rpl26 ENSMUSG00000060938 124.96 1298.29 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
60. Slc25a5 ENSMUSG00000016319 124.96 1298.29 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
61. Rps8 ENSMUSG00000047675 123.60 1284.16 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
62. Ywhab ENSMUSG00000018326 123.60 1284.16 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
63. Gm17132 ENSMUSG00000061331 119.53 1241.87 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
64. Morf4l1 ENSMUSG00000062270 118.17 1227.74 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
65. Pabpc1 ENSMUSG00000022283 118.17 1227.74 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Rpl34 ENSMUSG00000062006 118.17 1227.74 ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:1915686]
67. Hnrnpc ENSMUSG00000060373 116.81 1213.61 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
68. Hnrnpa0 ENSMUSG00000007836 115.45 1199.48 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
69. Rpl9-ps6 ENSMUSG00000062456 115.45 1199.48 ribosomal protein L9, pseudogene 6 [Source:MGI Symbol;Acc:MGI:3642682]
70. Ldha ENSMUSG00000063229 114.09 1185.35 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
71. Top2a ENSMUSG00000020914 112.73 1171.22 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
72. Eif4h ENSMUSG00000040731 111.38 1157.20 eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822]
73. Gm10073 ENSMUSG00000060019 111.38 1157.20 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
74. Meg3 ENSMUSG00000021268 111.38 1157.20 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
75. Tmpo ENSMUSG00000019961 111.38 1157.20 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
76. Igfbp4 ENSMUSG00000017493 105.94 1100.68 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
77. Nedd4 ENSMUSG00000032216 104.59 1086.65 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
78. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 103.23 1072.52 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
79. Crabp1 ENSMUSG00000032291 101.87 1058.39 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
80. Adprh ENSMUSG00000002844 100.51 1044.26 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
81. Rps5 ENSMUSG00000012848 100.51 1044.26 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
82. Kpnb1 ENSMUSG00000001440 99.15 1030.13 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
83. Myl6 ENSMUSG00000090841 99.15 1030.13 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
84. U2af2 ENSMUSG00000030435 97.79 1016.00 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
85. Rps19-ps6 ENSMUSG00000096942 96.44 1001.98 ribosomal protein S19, pseudogene 6 [Source:MGI Symbol;Acc:MGI:5011818]
86. Fscn1 ENSMUSG00000029581 95.08 987.85 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
87. Hmgn1 ENSMUSG00000040681 95.08 987.85 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
88. Malat1 ENSMUSG00000092341 95.08 987.85 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
89. Gm15459 ENSMUSG00000100801 93.72 973.72 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
90. Rpl13a ENSMUSG00000074129 93.72 973.72 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
91. Serbp1 ENSMUSG00000036371 93.72 973.72 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
92. Srsf3 ENSMUSG00000071172 93.72 973.72 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
93. Grb10 ENSMUSG00000020176 91.00 945.46 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
94. Hspe1 ENSMUSG00000073676 91.00 945.46 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
95. Tecr ENSMUSG00000031708 91.00 945.46 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
96. Pcbp1 ENSMUSG00000051695 89.64 931.33 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
97. Sfpq ENSMUSG00000028820 89.64 931.33 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
98. Banf1 ENSMUSG00000024844 88.29 917.30 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
99. Gm10263 ENSMUSG00000066407 88.29 917.30 predicted gene 10263 [Source:MGI Symbol;Acc:MGI:3642825]
100. Rpl37a ENSMUSG00000046330 88.29 917.30 ribosomal protein L37a [Source:MGI Symbol;Acc:MGI:98068]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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