Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s27.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Atp6 ENSMUSG00000064357 3480.89 36166.39 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
2. mt-Cytb ENSMUSG00000064370 3023.98 31419.10 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 3012.28 31297.54 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. Ptma ENSMUSG00000026238 2735.35 28420.24 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 2194.85 22804.45 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1903.99 19782.42 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Nd2 ENSMUSG00000064345 1595.85 16580.85 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
8. mt-Co1 ENSMUSG00000064351 1535.67 15955.58 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd4 ENSMUSG00000064363 1359.04 14120.40 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Nd3 ENSMUSG00000064360 1045.33 10860.96 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Rnr1 ENSMUSG00000064337 932.21 9685.65 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
12. mt-Nd5 ENSMUSG00000064367 920.51 9564.08 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Actb ENSMUSG00000029580 770.06 8000.91 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 668.10 6941.55 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. H19 ENSMUSG00000000031 666.98 6929.91 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Mdk ENSMUSG00000027239 590.09 6131.02 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Igf2 ENSMUSG00000048583 550.52 5719.89 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. mt-Co3 ENSMUSG00000064358 427.94 4446.29 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Rpsa ENSMUSG00000032518 397.85 4133.65 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Hsp90ab1 ENSMUSG00000023944 302.01 3137.88 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
21. Npm1 ENSMUSG00000057113 286.41 2975.79 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Hmga2 ENSMUSG00000056758 272.48 2831.06 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Nedd4 ENSMUSG00000032216 231.80 2408.40 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Gm13340 ENSMUSG00000083563 211.18 2194.16 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
25. Ybx1 ENSMUSG00000028639 210.63 2188.44 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
26. Cfl1 ENSMUSG00000056201 204.50 2124.75 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Tuba1b ENSMUSG00000023004 195.02 2026.25 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Malat1 ENSMUSG00000092341 186.11 1933.68 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
29. Rps3a1 ENSMUSG00000028081 180.54 1875.81 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
30. Hbb-y ENSMUSG00000052187 178.86 1858.35 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
31. Rpl23 ENSMUSG00000071415 178.31 1852.64 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
32. Atp5g3 ENSMUSG00000018770 170.51 1771.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
33. Eif4g2 ENSMUSG00000005610 169.39 1759.96 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Eif5a ENSMUSG00000078812 169.39 1759.96 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Pbx1 ENSMUSG00000052534 163.26 1696.27 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
36. Set ENSMUSG00000054766 162.15 1684.74 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
37. Tubb5 ENSMUSG00000001525 156.58 1626.86 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
38. Tpt1 ENSMUSG00000060126 154.35 1603.69 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Eef1b2 ENSMUSG00000025967 148.22 1540.00 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
40. Meg3 ENSMUSG00000021268 148.22 1540.00 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
41. Chchd2 ENSMUSG00000070493 145.99 1516.83 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Rps20 ENSMUSG00000028234 145.43 1511.02 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Pabpc1 ENSMUSG00000022283 143.76 1493.66 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
44. Ran ENSMUSG00000029430 143.76 1493.66 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
45. Ubb ENSMUSG00000019505 138.75 1441.61 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
46. Peg3 ENSMUSG00000002265 138.19 1435.79 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
47. Rps26 ENSMUSG00000025362 137.63 1429.97 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
48. Pkm ENSMUSG00000032294 133.73 1389.45 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
49. Rpl4 ENSMUSG00000032399 132.62 1377.92 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
50. Hsp90aa1 ENSMUSG00000021270 129.27 1343.11 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Rplp1 ENSMUSG00000007892 127.60 1325.76 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
52. Hmgn1 ENSMUSG00000040681 126.49 1314.23 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
53. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 123.70 1285.24 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
54. Pcbp1 ENSMUSG00000051695 120.36 1250.54 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
55. Marcksl1 ENSMUSG00000047945 115.90 1204.20 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
56. Hnrnpc ENSMUSG00000060373 114.79 1192.67 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
57. Hnrnpa2b1 ENSMUSG00000004980 110.88 1152.04 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
58. Rps4x ENSMUSG00000031320 110.88 1152.04 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
59. Son ENSMUSG00000022961 109.21 1134.69 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
60. Rpl32 ENSMUSG00000057841 106.98 1111.52 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
61. Ywhab ENSMUSG00000018326 106.43 1105.81 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
62. Tmsb4x ENSMUSG00000049775 105.87 1099.99 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
63. 2810417H13Rik 104.76 1088.45 RIKEN cDNA 2810417H13 gene
64. Rps9 ENSMUSG00000006333 104.76 1088.45 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
65. H3f3b ENSMUSG00000016559 104.20 1082.64 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
66. Anp32b ENSMUSG00000028333 101.41 1053.65 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
67. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 100.86 1047.93 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
68. Rrm2 ENSMUSG00000020649 99.74 1036.30 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
69. U2af2 ENSMUSG00000030435 98.63 1024.76 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
70. Rpl39-ps ENSMUSG00000036305 98.07 1018.95 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
71. Gm14586 ENSMUSG00000083621 96.40 1001.59 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
72. Eef2 ENSMUSG00000034994 90.27 937.90 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
73. Banf1 ENSMUSG00000024844 88.60 920.55 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
74. Rps5 ENSMUSG00000012848 88.60 920.55 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
75. Trim28 ENSMUSG00000005566 88.04 914.73 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Rpl9-ps6 ENSMUSG00000062456 86.92 903.10 ribosomal protein L9, pseudogene 6 [Source:MGI Symbol;Acc:MGI:3642682]
77. Hba-x ENSMUSG00000055609 85.81 891.56 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
78. Paics ENSMUSG00000029247 85.81 891.56 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
79. Serbp1 ENSMUSG00000036371 84.70 880.03 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
80. Ldha ENSMUSG00000063229 84.14 874.21 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
81. Rpl8 ENSMUSG00000003970 84.14 874.21 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
82. Rpl37 ENSMUSG00000041841 83.58 868.39 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
83. Grb10 ENSMUSG00000020176 83.02 862.58 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
84. Gm17132 ENSMUSG00000061331 81.91 851.04 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
85. Hnrnph1 ENSMUSG00000007850 81.91 851.04 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
86. Gnb2l1 Gnb2l1 80.80 839.51
87. Rpl26 ENSMUSG00000060938 79.68 827.87 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
88. Ywhae ENSMUSG00000020849 79.68 827.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
89. Eef1g ENSMUSG00000071644 79.12 822.06 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
90. Marcks ENSMUSG00000069662 79.12 822.06 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
91. Gm14303 ENSMUSG00000081344 78.57 816.34 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
92. Rpl18a ENSMUSG00000045128 78.57 816.34 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
93. Wbp5 78.57 816.34 WW domain binding protein 5
94. Gm26924 Gm26924 77.45 804.70
95. Fkbp1a ENSMUSG00000032966 75.78 787.35 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
96. Txn1 ENSMUSG00000028367 74.67 775.82 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
97. Rpl13a ENSMUSG00000074129 74.11 770.00 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
98. Tsc22d1 ENSMUSG00000022010 74.11 770.00 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
99. Cdkn1c ENSMUSG00000037664 71.88 746.83 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
100. Tmsb10 ENSMUSG00000079523 71.32 741.01 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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