Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s26.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5246.20 54513.14 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3203.34 33285.83 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2751.69 28592.74 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd5 ENSMUSG00000064367 2003.97 20823.20 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
5. Ptma ENSMUSG00000026238 1836.20 19079.91 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Co2 ENSMUSG00000064354 1763.05 18319.81 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1559.29 16202.55 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Nd2 ENSMUSG00000064345 1555.81 16166.38 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1443.18 14996.05 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd4 ENSMUSG00000064363 1299.21 13500.06 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Rnr1 ENSMUSG00000064337 905.62 9410.28 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
12. mt-Nd3 ENSMUSG00000064360 830.73 8632.10 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 763.97 7938.39 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Igf2 ENSMUSG00000048583 655.41 6810.35 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. H19 ENSMUSG00000000031 610.13 6339.85 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Mdk ENSMUSG00000027239 560.79 5827.16 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Eef1a1 ENSMUSG00000037742 486.48 5055.00 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. mt-Co3 ENSMUSG00000064358 344.83 3583.12 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Hmga2 ENSMUSG00000056758 333.80 3468.51 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Rpsa ENSMUSG00000032518 330.32 3432.35 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Npm1 ENSMUSG00000057113 305.94 3179.02 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Hsp90ab1 ENSMUSG00000023944 285.04 2961.84 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Nedd4 ENSMUSG00000032216 225.24 2340.46 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Cfl1 ENSMUSG00000056201 210.73 2189.69 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Malat1 ENSMUSG00000092341 206.09 2141.48 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
26. Pkm ENSMUSG00000032294 204.93 2129.42 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Tubb5 ENSMUSG00000001525 202.02 2099.18 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Tuba1b ENSMUSG00000023004 200.28 2081.10 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Gm13340 ENSMUSG00000083563 184.61 1918.28 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
30. Rpl23 ENSMUSG00000071415 181.12 1882.01 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. Ybx1 ENSMUSG00000028639 180.54 1875.99 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
32. Eif5a ENSMUSG00000078812 179.96 1869.96 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
33. Pbx1 ENSMUSG00000052534 170.09 1767.40 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
34. Gm10800 ENSMUSG00000075014 166.61 1731.24 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
35. Peg3 ENSMUSG00000002265 164.29 1707.13 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
36. Meg3 ENSMUSG00000021268 161.39 1677.00 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
37. Gm17132 ENSMUSG00000061331 150.36 1562.39 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
38. Atp5g3 ENSMUSG00000018770 149.19 1550.23 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Eef1b2 ENSMUSG00000025967 149.19 1550.23 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
40. Chchd2 ENSMUSG00000070493 146.87 1526.12 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rps3a1 ENSMUSG00000028081 143.39 1489.96 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
42. Rps20 ENSMUSG00000028234 141.07 1465.85 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Tpt1 ENSMUSG00000060126 139.33 1447.77 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
44. Pabpc1 ENSMUSG00000022283 138.16 1435.62 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
45. Ran ENSMUSG00000029430 135.84 1411.51 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
46. Rpl4 ENSMUSG00000032399 132.36 1375.35 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
47. Ubb ENSMUSG00000019505 128.88 1339.19 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
48. Pcbp1 ENSMUSG00000051695 125.39 1302.92 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Hsp90aa1 ENSMUSG00000021270 124.23 1290.87 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Ywhab ENSMUSG00000018326 123.65 1284.84 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. Eif4g2 ENSMUSG00000005610 120.17 1248.68 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
52. Rps4x ENSMUSG00000031320 118.43 1230.60 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Cdkn1c ENSMUSG00000037664 117.27 1218.55 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
54. Rplp1 ENSMUSG00000007892 115.52 1200.37 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
55. Hnrnpc ENSMUSG00000060373 114.36 1188.31 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
56. Set ENSMUSG00000054766 113.20 1176.26 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. 2810417H13Rik 112.62 1170.23 RIKEN cDNA 2810417H13 gene
58. Rps26 ENSMUSG00000025362 110.30 1146.12 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
59. Hmgn1 ENSMUSG00000040681 107.98 1122.02 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
60. Son ENSMUSG00000022961 107.98 1122.02 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
61. U2af2 ENSMUSG00000030435 103.33 1073.70 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Eef2 ENSMUSG00000034994 100.43 1043.57 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
63. H3f3b ENSMUSG00000016559 99.85 1037.54 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
64. Rpl39-ps ENSMUSG00000036305 99.85 1037.54 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
65. Ldha ENSMUSG00000063229 99.27 1031.51 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
66. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 98.69 1025.49 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
67. Rpl37 ENSMUSG00000041841 98.69 1025.49 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
68. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 97.53 1013.43 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
69. Rpl32 ENSMUSG00000057841 96.37 1001.38 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
70. Rrm2 ENSMUSG00000020649 96.37 1001.38 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
71. Grb10 ENSMUSG00000020176 95.79 995.35 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
72. Trim28 ENSMUSG00000005566 93.46 971.14 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
73. Rpl13a ENSMUSG00000074129 92.30 959.09 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
74. Ywhae ENSMUSG00000020849 90.56 941.01 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
75. Anp32b ENSMUSG00000028333 88.82 922.93 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
76. Serbp1 ENSMUSG00000036371 88.82 922.93 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
77. Hbb-y ENSMUSG00000052187 88.24 916.90 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
78. Rps5 ENSMUSG00000012848 87.66 910.87 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
79. Rps9 ENSMUSG00000006333 87.66 910.87 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
80. Marcksl1 ENSMUSG00000047945 84.76 880.74 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
81. Tmsb10 ENSMUSG00000079523 83.60 868.69 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
82. Rpl18a ENSMUSG00000045128 83.02 862.66 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
83. Hnrnpa2b1 ENSMUSG00000004980 81.85 850.50 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
84. Rbm25 ENSMUSG00000010608 81.85 850.50 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
85. Ago2 ENSMUSG00000036698 80.69 838.45 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
86. Eef1g ENSMUSG00000071644 80.69 838.45 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
87. Rpl41 ENSMUSG00000093674 80.69 838.45 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
88. Tmsb4x ENSMUSG00000049775 80.69 838.45 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
89. Gm14586 ENSMUSG00000083621 80.11 832.42 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
90. Eif4h ENSMUSG00000040731 77.79 808.31 eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822]
91. Tmpo ENSMUSG00000019961 77.21 802.29 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
92. Igfbp4 ENSMUSG00000017493 76.05 790.23 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
93. Marcks ENSMUSG00000069662 75.47 784.21 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
94. Fkbp1a ENSMUSG00000032966 74.89 778.18 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
95. Top1 ENSMUSG00000070544 74.89 778.18 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
96. Hnrnph1 ENSMUSG00000007850 74.31 772.15 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
97. Srsf3 ENSMUSG00000071172 74.31 772.15 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
98. Hoxc8 ENSMUSG00000001657 73.73 766.13 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
99. Rpl8 ENSMUSG00000003970 73.73 766.13 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
100. Gm21897 ENSMUSG00000094472 73.15 760.10 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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