Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s25.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3552.45 36910.87 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2884.89 29974.75 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2412.86 25070.24 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. Ptma ENSMUSG00000026238 2250.93 23387.74 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 2127.19 22102.05 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1516.91 15761.09 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1325.20 13769.17 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1072.38 11142.30 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd4 ENSMUSG00000064363 898.23 9332.84 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Nd3 ENSMUSG00000064360 877.61 9118.59 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Actb ENSMUSG00000029580 806.58 8380.57 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Rnr1 ENSMUSG00000064337 694.30 7213.96 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
13. mt-Nd5 ENSMUSG00000064367 688.19 7150.47 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. Igf2 ENSMUSG00000048583 649.23 6745.67 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. H19 ENSMUSG00000000031 600.35 6237.79 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Eef1a1 ENSMUSG00000037742 575.91 5983.85 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Mdk ENSMUSG00000027239 560.63 5825.09 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. mt-Co3 ENSMUSG00000064358 424.67 4412.43 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Rpsa ENSMUSG00000032518 391.07 4063.32 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Npm1 ENSMUSG00000057113 323.85 3364.89 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Hmga2 ENSMUSG00000056758 289.48 3007.77 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Hsp90ab1 ENSMUSG00000023944 278.79 2896.70 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Tuba1b ENSMUSG00000023004 253.58 2634.76 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Nedd4 ENSMUSG00000032216 251.29 2610.97 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Eif5a ENSMUSG00000078812 228.38 2372.93 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
26. Rpl23 ENSMUSG00000071415 218.45 2269.75 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
27. Tubb5 ENSMUSG00000001525 212.34 2206.27 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Ybx1 ENSMUSG00000028639 210.05 2182.47 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Chchd2 ENSMUSG00000070493 203.17 2110.99 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
30. Cfl1 ENSMUSG00000056201 199.35 2071.30 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
31. Pkm ENSMUSG00000032294 198.59 2063.40 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Gm13340 ENSMUSG00000083563 193.24 2007.81 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Peg3 ENSMUSG00000002265 179.49 1864.95 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
34. Atp5g3 ENSMUSG00000018770 177.20 1841.15 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
35. Pbx1 ENSMUSG00000052534 175.67 1825.26 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
36. Ran ENSMUSG00000029430 173.38 1801.46 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
37. Rps3a1 ENSMUSG00000028081 169.56 1761.77 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
38. Rps20 ENSMUSG00000028234 168.80 1753.88 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Eif4g2 ENSMUSG00000005610 162.69 1690.39 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Eef1b2 ENSMUSG00000025967 156.58 1626.91 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
41. Hbb-y ENSMUSG00000052187 156.58 1626.91 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
42. Malat1 ENSMUSG00000092341 155.82 1619.01 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
43. Cdkn1c ENSMUSG00000037664 154.29 1603.11 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
44. Hmgn1 ENSMUSG00000040681 151.23 1571.32 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
45. Tpt1 ENSMUSG00000060126 150.47 1563.42 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Tmsb4x ENSMUSG00000049775 147.41 1531.63 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
47. Pabpc1 ENSMUSG00000022283 134.43 1396.76 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
48. Pcbp1 ENSMUSG00000051695 134.43 1396.76 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Rpl32 ENSMUSG00000057841 134.43 1396.76 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
50. Ubb ENSMUSG00000019505 132.14 1372.97 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
51. Hsp90aa1 ENSMUSG00000021270 128.32 1333.28 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Rpl39-ps ENSMUSG00000036305 128.32 1333.28 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
53. Rpl4 ENSMUSG00000032399 126.03 1309.48 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
54. Rplp1 ENSMUSG00000007892 126.03 1309.48 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
55. Rps26 ENSMUSG00000025362 126.03 1309.48 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
56. Set ENSMUSG00000054766 126.03 1309.48 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. Rps9 ENSMUSG00000006333 125.26 1301.48 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
58. Son ENSMUSG00000022961 124.50 1293.59 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
59. Ywhab ENSMUSG00000018326 124.50 1293.59 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
60. Hnrnpc ENSMUSG00000060373 119.15 1238.00 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
61. Ldha ENSMUSG00000063229 119.15 1238.00 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
62. Rps4x ENSMUSG00000031320 119.15 1238.00 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
63. 2810417H13Rik 116.86 1214.21 RIKEN cDNA 2810417H13 gene
64. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 116.10 1206.31 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
65. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 116.10 1206.31 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
66. Marcksl1 ENSMUSG00000047945 114.57 1190.41 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
67. Grb10 ENSMUSG00000020176 112.28 1166.62 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
68. Gm17132 ENSMUSG00000061331 103.11 1071.34 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
69. Meg3 ENSMUSG00000021268 103.11 1071.34 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
70. U2af2 ENSMUSG00000030435 102.35 1063.44 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
71. Ywhae ENSMUSG00000020849 102.35 1063.44 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
72. Banf1 ENSMUSG00000024844 101.59 1055.55 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
73. Marcks ENSMUSG00000069662 101.59 1055.55 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
74. Anp32b ENSMUSG00000028333 100.06 1039.65 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
75. Rpl41 ENSMUSG00000093674 98.53 1023.75 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
76. Rps5 ENSMUSG00000012848 98.53 1023.75 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
77. Eef2 ENSMUSG00000034994 96.24 999.96 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
78. Rpl37 ENSMUSG00000041841 94.71 984.06 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
79. Trim28 ENSMUSG00000005566 94.71 984.06 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
80. Hnrnpa2b1 ENSMUSG00000004980 93.18 968.16 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
81. Rpl18a ENSMUSG00000045128 93.18 968.16 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
82. H3f3b ENSMUSG00000016559 90.89 944.37 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
83. Rpl8 ENSMUSG00000003970 90.13 936.47 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
84. Serbp1 ENSMUSG00000036371 90.13 936.47 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
85. Gm10800 ENSMUSG00000075014 89.37 928.58 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
86. Tmsb10 ENSMUSG00000079523 89.37 928.58 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
87. Sf3b4 ENSMUSG00000068856 88.60 920.58 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
88. Hnrnph1 ENSMUSG00000007850 86.31 896.78 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
89. Gnb2l1 Gnb2l1 84.02 872.99
90. Gm14586 ENSMUSG00000083621 83.25 864.99 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
91. Hoxc8 ENSMUSG00000001657 83.25 864.99 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
92. Tuba1a ENSMUSG00000072235 82.49 857.09 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
93. Ago2 ENSMUSG00000036698 81.73 849.20 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
94. Nucks1 ENSMUSG00000026434 81.73 849.20 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
95. Rpl13a ENSMUSG00000074129 81.73 849.20 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
96. Gm14303 ENSMUSG00000081344 80.96 841.20 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
97. Rpl7 ENSMUSG00000043716 80.20 833.30 ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
98. Rrm2 ENSMUSG00000020649 80.20 833.30 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
99. Col3a1 ENSMUSG00000026043 79.44 825.40 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
100. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 79.44 825.40 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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