Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E10_5_slice_1, section s24.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4492.69 46682.60 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3174.44 32984.94 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2758.40 28661.95 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. Ptma ENSMUSG00000026238 2064.68 21453.65 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd1 ENSMUSG00000064341 1731.94 17996.22 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1688.64 17546.30 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Rnr1 ENSMUSG00000064337 1658.52 17233.33 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
8. mt-Nd5 ENSMUSG00000064367 1468.38 15257.63 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1369.08 14225.82 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1271.19 13208.67 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 1246.71 12954.30 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. mt-Nd3 ENSMUSG00000064360 817.97 8499.35 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 777.02 8073.85 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Igf2 ENSMUSG00000048583 675.36 7017.52 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. H19 ENSMUSG00000000031 668.30 6944.16 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Eef1a1 ENSMUSG00000037742 623.12 6474.71 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Mdk ENSMUSG00000027239 602.88 6264.40 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Rpsa ENSMUSG00000032518 355.80 3697.04 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Co3 ENSMUSG00000064358 354.86 3687.28 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Npm1 ENSMUSG00000057113 316.74 3291.18 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Hmga2 ENSMUSG00000056758 296.50 3080.87 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Hsp90ab1 ENSMUSG00000023944 265.91 2763.01 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Ybx1 ENSMUSG00000028639 235.32 2445.16 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
24. Nedd4 ENSMUSG00000032216 231.08 2401.10 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Cfl1 ENSMUSG00000056201 211.79 2200.67 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Pkm ENSMUSG00000032294 191.55 1990.36 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Tubb5 ENSMUSG00000001525 186.37 1936.53 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Gm13340 ENSMUSG00000083563 184.49 1917.00 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
29. Eif5a ENSMUSG00000078812 176.49 1833.87 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
30. Rpl23 ENSMUSG00000071415 176.49 1833.87 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. Peg3 ENSMUSG00000002265 171.78 1784.93 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. Malat1 ENSMUSG00000092341 169.43 1760.51 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
33. Eif4g2 ENSMUSG00000005610 161.90 1682.27 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Pbx1 ENSMUSG00000052534 161.90 1682.27 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
35. Ran ENSMUSG00000029430 160.02 1662.73 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
36. Rps3a1 ENSMUSG00000028081 159.07 1652.86 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
37. Cdkn1c ENSMUSG00000037664 157.19 1633.33 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
38. Chchd2 ENSMUSG00000070493 156.72 1628.44 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Tuba1b ENSMUSG00000023004 156.72 1628.44 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
40. Rpl4 ENSMUSG00000032399 153.90 1599.14 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Hbb-y ENSMUSG00000052187 146.37 1520.90 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
42. Set ENSMUSG00000054766 146.37 1520.90 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
43. Atp5g3 ENSMUSG00000018770 145.43 1511.13 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Pabpc1 ENSMUSG00000022283 143.54 1491.49 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
45. Eef1b2 ENSMUSG00000025967 140.72 1462.19 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Tpt1 ENSMUSG00000060126 135.54 1408.37 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
47. Meg3 ENSMUSG00000021268 135.07 1403.48 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
48. Ubb ENSMUSG00000019505 133.19 1383.95 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
49. Pcbp1 ENSMUSG00000051695 132.72 1379.07 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
50. Hsp90aa1 ENSMUSG00000021270 131.31 1364.41 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Rps20 ENSMUSG00000028234 131.31 1364.41 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Rps26 ENSMUSG00000025362 130.37 1354.65 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
53. Rps4x ENSMUSG00000031320 129.90 1349.76 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
54. Gm17132 ENSMUSG00000061331 125.19 1300.82 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
55. Hmgn1 ENSMUSG00000040681 122.37 1271.52 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
56. Son ENSMUSG00000022961 120.01 1247.00 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
57. 2810417H13Rik 115.31 1198.16 RIKEN cDNA 2810417H13 gene
58. Anp32b ENSMUSG00000028333 114.84 1193.28 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
59. Tmsb4x ENSMUSG00000049775 114.84 1193.28 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
60. Hnrnpc ENSMUSG00000060373 112.01 1163.87 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
61. Ywhab ENSMUSG00000018326 112.01 1163.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
62. Marcksl1 ENSMUSG00000047945 110.13 1144.34 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
63. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 108.72 1129.69 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
64. Rplp1 ENSMUSG00000007892 108.25 1124.80 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
65. Hnrnpa2b1 ENSMUSG00000004980 107.78 1119.92 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
66. Rps9 ENSMUSG00000006333 106.83 1110.05 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
67. Marcks ENSMUSG00000069662 105.89 1100.28 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
68. Gm10800 ENSMUSG00000075014 104.95 1090.51 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
69. Ywhae ENSMUSG00000020849 99.77 1036.69 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
70. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 99.30 1031.81 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
71. Rpl32 ENSMUSG00000057841 95.54 992.74 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
72. Grb10 ENSMUSG00000020176 94.13 978.08 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
73. Eef2 ENSMUSG00000034994 93.19 968.32 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
74. Ldha ENSMUSG00000063229 92.72 963.43 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
75. Rpl18a ENSMUSG00000045128 91.30 948.68 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
76. Rpl8 ENSMUSG00000003970 89.42 929.14 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
77. Sfpq ENSMUSG00000028820 89.42 929.14 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
78. Rpl39-ps ENSMUSG00000036305 88.95 924.26 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
79. U2af2 ENSMUSG00000030435 87.54 909.61 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
80. Paics ENSMUSG00000029247 86.13 894.96 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
81. Trim28 ENSMUSG00000005566 86.13 894.96 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
82. Ago2 ENSMUSG00000036698 85.66 890.08 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
83. Fkbp1a ENSMUSG00000032966 84.71 880.20 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
84. Rps5 ENSMUSG00000012848 84.24 875.32 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
85. Ywhaz ENSMUSG00000022285 84.24 875.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
86. Hoxc8 ENSMUSG00000001657 83.77 870.44 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
87. Serbp1 ENSMUSG00000036371 83.77 870.44 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
88. Gm14586 ENSMUSG00000083621 82.36 855.79 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Rpl13a ENSMUSG00000074129 82.36 855.79 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
90. Rrm2 ENSMUSG00000020649 80.95 841.13 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
91. Banf1 ENSMUSG00000024844 79.07 821.60 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
92. Hnrnph1 ENSMUSG00000007850 77.18 801.96 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
93. H3f3b ENSMUSG00000016559 75.30 782.43 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
94. Ddx5 ENSMUSG00000020719 74.83 777.54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
95. Txn1 ENSMUSG00000028367 74.83 777.54 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
96. Cox8a ENSMUSG00000035885 73.89 767.78 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
97. Top1 ENSMUSG00000070544 73.89 767.78 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
98. Gm14303 ENSMUSG00000081344 71.54 743.36 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
99. Rpl37 ENSMUSG00000041841 71.54 743.36 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
100. Sf3b4 ENSMUSG00000068856 69.65 723.72 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA