Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s23.

Sample reads: 96,260. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4079.26 42377.53 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3155.39 32779.88 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2473.14 25692.30 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Co2 ENSMUSG00000064354 2292.16 23812.18 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. Ptma ENSMUSG00000026238 2014.52 20927.91 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 1915.97 19904.12 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1413.77 14687.00 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 1195.83 12422.92 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Nd4 ENSMUSG00000064363 1150.34 11950.35 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Nd2 ENSMUSG00000064345 1110.55 11536.99 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. H19 ENSMUSG00000000031 809.22 8406.61 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. Actb ENSMUSG00000029580 796.90 8278.62 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd5 ENSMUSG00000064367 751.42 7806.15 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. mt-Rnr1 ENSMUSG00000064337 714.46 7422.19 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
15. Igf2 ENSMUSG00000048583 676.56 7028.47 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Eef1a1 ENSMUSG00000037742 584.65 6073.66 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Mdk ENSMUSG00000027239 495.58 5148.35 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. mt-Co3 ENSMUSG00000064358 446.30 4636.40 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Rpsa ENSMUSG00000032518 389.45 4045.81 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Hmga2 ENSMUSG00000056758 271.00 2815.29 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Npm1 ENSMUSG00000057113 264.37 2746.42 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Hsp90ab1 ENSMUSG00000023944 254.89 2647.93 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Cfl1 ENSMUSG00000056201 252.05 2618.43 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Nedd4 ENSMUSG00000032216 228.36 2372.33 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Eif5a ENSMUSG00000078812 221.73 2303.45 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
26. Rpl23 ENSMUSG00000071415 219.83 2283.71 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
27. Tubb5 ENSMUSG00000001525 218.89 2273.95 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Ybx1 ENSMUSG00000028639 211.31 2195.20 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Tuba1b ENSMUSG00000023004 204.67 2126.22 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Set ENSMUSG00000054766 183.83 1909.72 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
31. Gm13340 ENSMUSG00000083563 180.98 1880.12 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
32. Peg3 ENSMUSG00000002265 176.25 1830.98 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
33. Pbx1 ENSMUSG00000052534 174.35 1811.24 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
34. Rps26 ENSMUSG00000025362 173.40 1801.37 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
35. Atp5g3 ENSMUSG00000018770 169.61 1762.00 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
36. Pkm ENSMUSG00000032294 169.61 1762.00 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
37. Cdkn1c ENSMUSG00000037664 165.82 1722.63 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
38. Malat1 ENSMUSG00000092341 161.09 1673.49 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
39. Eif4g2 ENSMUSG00000005610 160.14 1663.62 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Rps20 ENSMUSG00000028234 156.35 1624.25 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Pabpc1 ENSMUSG00000022283 153.51 1594.74 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
42. Rps4x ENSMUSG00000031320 151.61 1575.01 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
43. Hsp90aa1 ENSMUSG00000021270 150.66 1565.14 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
44. Rpl4 ENSMUSG00000032399 149.72 1555.37 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Ran ENSMUSG00000029430 147.82 1535.63 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
46. Chchd2 ENSMUSG00000070493 143.08 1486.39 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Rps3a1 ENSMUSG00000028081 142.13 1476.52 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
48. Hmgn1 ENSMUSG00000040681 140.24 1456.89 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
49. Meg3 ENSMUSG00000021268 139.29 1447.02 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
50. Ldha ENSMUSG00000063229 134.55 1397.78 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
51. Tpt1 ENSMUSG00000060126 134.55 1397.78 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
52. Eef1b2 ENSMUSG00000025967 132.66 1378.14 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Rplp1 ENSMUSG00000007892 132.66 1378.14 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. 2810417H13Rik 126.97 1319.03 RIKEN cDNA 2810417H13 gene
55. Pcbp1 ENSMUSG00000051695 126.97 1319.03 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
56. Rpl37 ENSMUSG00000041841 125.08 1299.40 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
57. Rpl32 ENSMUSG00000057841 124.13 1289.53 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
58. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 118.45 1230.52 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
59. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 117.50 1220.65 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
60. Rpl39-ps ENSMUSG00000036305 117.50 1220.65 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
61. Son ENSMUSG00000022961 116.55 1210.78 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
62. Ubb ENSMUSG00000019505 116.55 1210.78 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
63. Ywhab ENSMUSG00000018326 115.60 1200.91 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
64. Hnrnpc ENSMUSG00000060373 114.66 1191.15 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
65. Marcksl1 ENSMUSG00000047945 114.66 1191.15 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
66. Rpl8 ENSMUSG00000003970 106.13 1102.54 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
67. Ago2 ENSMUSG00000036698 105.18 1092.67 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
68. Eef2 ENSMUSG00000034994 105.18 1092.67 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
69. Rpl18a ENSMUSG00000045128 102.34 1063.16 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
70. Rps5 ENSMUSG00000012848 99.49 1033.56 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
71. Trim28 ENSMUSG00000005566 96.65 1004.05 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
72. Ywhae ENSMUSG00000020849 94.76 984.42 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
73. Fkbp1a ENSMUSG00000032966 93.81 974.55 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
74. Grb10 ENSMUSG00000020176 93.81 974.55 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
75. Rps9 ENSMUSG00000006333 93.81 974.55 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
76. Marcks ENSMUSG00000069662 92.86 964.68 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
77. Serbp1 ENSMUSG00000036371 92.86 964.68 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
78. U2af2 ENSMUSG00000030435 92.86 964.68 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
79. H3f3b ENSMUSG00000016559 91.91 954.81 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
80. Anp32b ENSMUSG00000028333 90.97 945.04 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
81. Gm14586 ENSMUSG00000083621 90.97 945.04 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
82. Tmsb4x ENSMUSG00000049775 89.07 925.31 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
83. Top1 ENSMUSG00000070544 89.07 925.31 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
84. Gnb2l1 Gnb2l1 87.18 905.67
85. Rpl13a ENSMUSG00000074129 86.23 895.80 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
86. Ccnd2 ENSMUSG00000000184 83.39 866.30 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
87. Nucks1 ENSMUSG00000026434 83.39 866.30 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
88. Tmpo ENSMUSG00000019961 82.44 856.43 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
89. Caprin1 ENSMUSG00000027184 81.49 846.56 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
90. Txn1 ENSMUSG00000028367 81.49 846.56 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
91. Hnrnpa2b1 ENSMUSG00000004980 79.60 826.93 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
92. Tmsb10 ENSMUSG00000079523 79.60 826.93 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
93. Cks1b ENSMUSG00000028044 77.70 807.19 CDC28 protein kinase 1b [Source:MGI Symbol;Acc:MGI:1889208]
94. Pfn1 ENSMUSG00000018293 77.70 807.19 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
95. Rpl26 ENSMUSG00000060938 77.70 807.19 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
96. Paics ENSMUSG00000029247 76.75 797.32 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
97. Ddx3x ENSMUSG00000000787 74.86 777.69 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
98. Kpnb1 ENSMUSG00000001440 74.86 777.69 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Gpc3 ENSMUSG00000055653 73.91 767.82 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
100. Srsf3 ENSMUSG00000071172 73.91 767.82 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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