Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s22.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7614.31 79114.87 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3032.03 31503.66 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2723.32 28296.08 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Rnr1 ENSMUSG00000064337 2430.34 25251.93 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
5. mt-Co2 ENSMUSG00000064354 1752.87 18212.82 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1674.29 17396.35 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Nd5 ENSMUSG00000064367 1599.64 16620.72 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
8. Ptma ENSMUSG00000026238 1485.14 15431.03 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
9. mt-Nd2 ENSMUSG00000064345 1462.13 15191.95 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1244.35 12929.15 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 1224.15 12719.27 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 840.23 8730.23 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Igf2 ENSMUSG00000048583 755.48 7849.65 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. mt-Nd3 ENSMUSG00000064360 697.67 7248.99 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. H19 ENSMUSG00000000031 602.81 6263.37 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Eef1a1 ENSMUSG00000037742 533.21 5540.21 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Co3 ENSMUSG00000064358 386.72 4018.13 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Mdk ENSMUSG00000027239 386.16 4012.31 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Rpsa ENSMUSG00000032518 358.10 3720.76 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Npm1 ENSMUSG00000057113 308.14 3201.66 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Hmga2 ENSMUSG00000056758 295.23 3067.52 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Peg3 ENSMUSG00000002265 263.80 2740.96 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
23. Hsp90ab1 ENSMUSG00000023944 254.82 2647.65 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
24. Set ENSMUSG00000054766 234.05 2431.85 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Ybx1 ENSMUSG00000028639 229.56 2385.19 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
26. Nedd4 ENSMUSG00000032216 220.58 2291.89 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Eif5a ENSMUSG00000078812 213.29 2216.14 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
28. Malat1 ENSMUSG00000092341 208.23 2163.57 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
29. Cfl1 ENSMUSG00000056201 194.20 2017.79 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Tubb5 ENSMUSG00000001525 172.87 1796.17 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Gm10800 ENSMUSG00000075014 171.75 1784.53 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
32. Gm13340 ENSMUSG00000083563 162.21 1685.41 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Pkm ENSMUSG00000032294 162.21 1685.41 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Pabpc1 ENSMUSG00000022283 153.23 1592.10 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
35. Rpl23 ENSMUSG00000071415 147.05 1527.89 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Chchd2 ENSMUSG00000070493 138.07 1434.59 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Tpt1 ENSMUSG00000060126 137.51 1428.77 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. 2810417H13Rik 134.15 1393.86 RIKEN cDNA 2810417H13 gene
39. Eif4g2 ENSMUSG00000005610 130.78 1358.84 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Gm17132 ENSMUSG00000061331 130.22 1353.02 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
41. Hsp90aa1 ENSMUSG00000021270 129.09 1341.28 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Ran ENSMUSG00000029430 127.41 1323.83 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
43. Atp5g3 ENSMUSG00000018770 126.85 1318.01 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Pbx1 ENSMUSG00000052534 126.85 1318.01 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
45. Eef1b2 ENSMUSG00000025967 125.73 1306.37 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Rpl4 ENSMUSG00000032399 125.73 1306.37 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
47. Hnrnpc ENSMUSG00000060373 125.17 1300.55 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Tuba1b ENSMUSG00000023004 121.24 1259.72 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
49. Hmgn1 ENSMUSG00000040681 118.43 1230.52 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
50. Rplp1 ENSMUSG00000007892 117.31 1218.88 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
51. Ywhab ENSMUSG00000018326 116.75 1213.07 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
52. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 116.18 1207.14 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
53. Marcks ENSMUSG00000069662 116.18 1207.14 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
54. Rps20 ENSMUSG00000028234 115.62 1201.33 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Gm26924 Gm26924 115.06 1195.51
56. Ubb ENSMUSG00000019505 114.50 1189.69 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
57. Meg3 ENSMUSG00000021268 113.38 1178.05 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
58. Ldha ENSMUSG00000063229 106.64 1108.02 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
59. Rps26 ENSMUSG00000025362 106.08 1102.20 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
60. Son ENSMUSG00000022961 103.84 1078.93 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
61. Rps3a1 ENSMUSG00000028081 101.03 1049.73 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
62. Rpl32 ENSMUSG00000057841 98.79 1026.46 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
63. Anp32b ENSMUSG00000028333 98.22 1020.53 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
64. Pcbp1 ENSMUSG00000051695 97.10 1008.90 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Ccnd2 ENSMUSG00000000184 95.42 991.44 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
66. Serbp1 ENSMUSG00000036371 92.61 962.24 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
67. Eef2 ENSMUSG00000034994 92.05 956.43 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
68. Cdkn1c ENSMUSG00000037664 91.49 950.61 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
69. Grb10 ENSMUSG00000020176 90.93 944.79 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
70. Rrm2 ENSMUSG00000020649 88.68 921.41 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
71. Gm26917 ENSMUSG00000097971 87.00 903.95 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
72. Paics ENSMUSG00000029247 84.75 880.58 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
73. Sfpq ENSMUSG00000028820 84.19 874.76 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
74. Rps4x ENSMUSG00000031320 83.07 863.12 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
75. Tmsb10 ENSMUSG00000079523 83.07 863.12 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
76. Top1 ENSMUSG00000070544 83.07 863.12 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
77. H3f3b ENSMUSG00000016559 82.51 857.30 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
78. Rpl37 ENSMUSG00000041841 80.82 839.74 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
79. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 80.82 839.74 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
80. U2af2 ENSMUSG00000030435 80.26 833.92 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
81. Marcksl1 ENSMUSG00000047945 79.14 822.29 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
82. Tmsb4x ENSMUSG00000049775 78.02 810.65 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
83. Nucks1 ENSMUSG00000026434 76.33 793.09 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
84. Srsf3 ENSMUSG00000071172 76.33 793.09 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
85. Hoxc8 ENSMUSG00000001657 75.21 781.45 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
86. Rps5 ENSMUSG00000012848 75.21 781.45 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
87. Top2a ENSMUSG00000020914 74.65 775.63 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
88. Ywhaz ENSMUSG00000022285 74.09 769.82 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
89. Gm14586 ENSMUSG00000083621 73.53 764.00 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
90. Rpl8 ENSMUSG00000003970 72.40 752.26 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Ywhae ENSMUSG00000020849 71.28 740.62 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
92. Hnrnpa2b1 ENSMUSG00000004980 70.72 734.80 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
93. Wbp5 70.72 734.80 WW domain binding protein 5
94. Rpl13a ENSMUSG00000074129 70.16 728.98 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
95. Rpl18a ENSMUSG00000045128 70.16 728.98 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
96. Rpl39-ps ENSMUSG00000036305 69.60 723.16 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
97. Rps9 ENSMUSG00000006333 69.04 717.35 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
98. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 68.48 711.53 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
99. Ddx3x ENSMUSG00000000787 67.91 705.60 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
100. Hnrnph1 ENSMUSG00000007850 67.91 705.60 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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