Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s21.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 6366.70 66145.64 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3063.67 31829.42 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2956.16 30712.47 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. Ptma ENSMUSG00000026238 1833.22 19045.90 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 1758.19 18266.39 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1621.00 16841.08 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Rnr1 ENSMUSG00000064337 1384.71 14386.18 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
8. mt-Nd2 ENSMUSG00000064345 1383.03 14368.73 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1222.33 12699.17 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd5 ENSMUSG00000064367 1208.89 12559.54 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd4 ENSMUSG00000064363 1136.10 11803.30 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 876.29 9104.05 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 793.14 8240.18 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. H19 ENSMUSG00000000031 689.56 7164.05 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Igf2 ENSMUSG00000048583 569.17 5913.28 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Eef1a1 ENSMUSG00000037742 531.94 5526.49 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Co3 ENSMUSG00000064358 442.91 4601.53 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Mdk ENSMUSG00000027239 419.67 4360.08 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Rpsa ENSMUSG00000032518 360.88 3749.30 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Npm1 ENSMUSG00000057113 296.48 3080.22 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Hsp90ab1 ENSMUSG00000023944 290.04 3013.32 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
22. Hmga2 ENSMUSG00000056758 267.93 2783.61 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Set ENSMUSG00000054766 228.17 2370.53 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
24. Ybx1 ENSMUSG00000028639 224.53 2332.71 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
25. Nedd4 ENSMUSG00000032216 221.45 2300.71 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Malat1 ENSMUSG00000092341 216.69 2251.26 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
27. Peg3 ENSMUSG00000002265 206.89 2149.44 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
28. Eif5a ENSMUSG00000078812 184.50 1916.83 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
29. Gm13340 ENSMUSG00000083563 182.82 1899.37 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
30. Tubb5 ENSMUSG00000001525 176.10 1829.56 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Tuba1b ENSMUSG00000023004 170.78 1774.29 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
32. Rpl23 ENSMUSG00000071415 166.58 1730.65 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Pkm ENSMUSG00000032294 164.90 1713.20 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Cfl1 ENSMUSG00000056201 164.34 1707.38 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
35. Eif4g2 ENSMUSG00000005610 153.42 1593.93 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. 2810417H13Rik 141.10 1465.93 RIKEN cDNA 2810417H13 gene
37. Rpl4 ENSMUSG00000032399 140.26 1457.20 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Pabpc1 ENSMUSG00000022283 138.86 1442.66 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
39. Tpt1 ENSMUSG00000060126 138.86 1442.66 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Chchd2 ENSMUSG00000070493 138.30 1436.84 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rps20 ENSMUSG00000028234 136.34 1416.48 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
42. Hsp90aa1 ENSMUSG00000021270 134.66 1399.02 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
43. Ran ENSMUSG00000029430 132.42 1375.75 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
44. Hmgn1 ENSMUSG00000040681 129.62 1346.66 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
45. Pcbp1 ENSMUSG00000051695 123.46 1282.66 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
46. Rps26 ENSMUSG00000025362 122.07 1268.22 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. Ccnd2 ENSMUSG00000000184 120.95 1256.59 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
48. Eef1b2 ENSMUSG00000025967 119.55 1242.04 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Ywhab ENSMUSG00000018326 116.75 1212.95 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Rps3a1 ENSMUSG00000028081 115.91 1204.23 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
51. Rplp1 ENSMUSG00000007892 114.79 1192.59 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
52. Atp5g3 ENSMUSG00000018770 113.11 1175.14 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Rps4x ENSMUSG00000031320 112.83 1172.23 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
54. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 112.83 1172.23 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
55. Marcks ENSMUSG00000069662 112.27 1166.41 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
56. Cdkn1c ENSMUSG00000037664 111.99 1163.50 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
57. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 111.15 1154.77 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
58. Hnrnpc ENSMUSG00000060373 109.75 1140.23 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
59. Ubb ENSMUSG00000019505 109.47 1137.32 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
60. Pbx1 ENSMUSG00000052534 107.23 1114.05 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
61. Grb10 ENSMUSG00000020176 105.55 1096.59 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
62. Son ENSMUSG00000022961 102.75 1067.50 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
63. Anp32b ENSMUSG00000028333 101.91 1058.77 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
64. Ldha ENSMUSG00000063229 100.79 1047.14 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
65. Tmsb4x ENSMUSG00000049775 100.51 1044.23 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
66. Eef2 ENSMUSG00000034994 100.23 1041.32 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
67. Serbp1 ENSMUSG00000036371 100.23 1041.32 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
68. Hnrnpa2b1 ENSMUSG00000004980 98.27 1020.96 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
69. Marcksl1 ENSMUSG00000047945 95.75 994.78 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
70. Top1 ENSMUSG00000070544 94.35 980.23 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
71. Hbb-y ENSMUSG00000052187 94.07 977.32 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
72. Nucks1 ENSMUSG00000026434 93.51 971.50 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
73. Rpl32 ENSMUSG00000057841 92.95 965.69 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
74. Banf1 ENSMUSG00000024844 89.03 924.96 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
75. H3f3b ENSMUSG00000016559 87.63 910.42 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
76. Ywhae ENSMUSG00000020849 87.63 910.42 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
77. Rpl8 ENSMUSG00000003970 86.51 898.78 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
78. Rpl39-ps ENSMUSG00000036305 86.23 895.87 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
79. Ddx3x ENSMUSG00000000787 85.67 890.05 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
80. Ncl ENSMUSG00000026234 84.83 881.33 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
81. Rpl26 ENSMUSG00000060938 81.75 849.33 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
82. Gm14586 ENSMUSG00000083621 80.07 831.87 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
83. Rpl37 ENSMUSG00000041841 79.23 823.15 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
84. Srsf3 ENSMUSG00000071172 79.23 823.15 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
85. Rrm2 ENSMUSG00000020649 78.67 817.33 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
86. Rps9 ENSMUSG00000006333 78.11 811.51 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
87. Top2a ENSMUSG00000020914 78.11 811.51 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
88. U2af2 ENSMUSG00000030435 77.83 808.60 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
89. Col3a1 ENSMUSG00000026043 76.71 796.96 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
90. Hoxc8 ENSMUSG00000001657 76.71 796.96 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
91. Rpl13a ENSMUSG00000074129 76.15 791.15 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
92. Paics ENSMUSG00000029247 74.75 776.60 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
93. Meg3 ENSMUSG00000021268 73.91 767.87 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
94. Ago2 ENSMUSG00000036698 73.35 762.06 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
95. Gm17132 ENSMUSG00000061331 73.07 759.15 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
96. Hnrnph1 ENSMUSG00000007850 72.79 756.24 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
97. Sub1 ENSMUSG00000022205 72.79 756.24 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
98. G3bp1 ENSMUSG00000018583 72.51 753.33 GTPase activating protein (SH3 domain) binding protein 1 [Source:MGI Symbol;Acc:MGI:1351465]
99. Rpl18a ENSMUSG00000045128 72.23 750.42 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
100. Rbm25 ENSMUSG00000010608 71.95 747.51 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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