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Experiment Mouse_E10_5_slice_1, section s16.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7007.80 72804.70 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2685.58 27900.74 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2302.87 23924.73 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. Ptma ENSMUSG00000026238 1881.31 19545.11 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Rnr1 ENSMUSG00000064337 1567.21 16281.89 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
6. mt-Co2 ENSMUSG00000064354 1533.32 15929.81 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1458.10 15148.34 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Nd2 ENSMUSG00000064345 1167.14 12125.53 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1158.87 12039.61 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd4 ENSMUSG00000064363 1022.49 10622.75 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 981.99 10201.99 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 737.32 7660.09 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Eef1a1 ENSMUSG00000037742 657.14 6827.09 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Actb ENSMUSG00000029580 635.65 6603.83 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Rpsa ENSMUSG00000032518 409.16 4250.80 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Malat1 ENSMUSG00000092341 334.77 3477.96 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
17. Tmsb4x ENSMUSG00000049775 314.93 3271.84 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
18. H19 ENSMUSG00000000031 314.10 3263.21 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. mt-Co3 ENSMUSG00000064358 314.10 3263.21 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Npm1 ENSMUSG00000057113 306.66 3185.92 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Igf2 ENSMUSG00000048583 286.83 2979.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Mdk ENSMUSG00000027239 276.91 2876.84 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Nedd4 ENSMUSG00000032216 245.50 2550.52 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Cfl1 ENSMUSG00000056201 223.18 2318.64 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Ybx1 ENSMUSG00000028639 205.82 2138.28 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
26. Hbb-y ENSMUSG00000052187 201.69 2095.38 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
27. Hsp90ab1 ENSMUSG00000023944 193.42 2009.46 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. Gm10800 ENSMUSG00000075014 185.98 1932.16 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
29. Pkm ENSMUSG00000032294 182.68 1897.88 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Rpl23 ENSMUSG00000071415 182.68 1897.88 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. Hmga2 ENSMUSG00000056758 181.02 1880.63 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
32. Gm17132 ENSMUSG00000061331 174.41 1811.96 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
33. Set ENSMUSG00000054766 171.10 1777.57 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. Eif4g2 ENSMUSG00000005610 170.28 1769.06 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Chchd2 ENSMUSG00000070493 166.14 1726.04 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
36. Tubb5 ENSMUSG00000001525 164.49 1708.90 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Tuba1a ENSMUSG00000072235 163.66 1700.28 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
38. Gm13340 ENSMUSG00000083563 159.53 1657.37 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
39. Eif5a ENSMUSG00000078812 155.40 1614.47 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Hsp90aa1 ENSMUSG00000021270 155.40 1614.47 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Rps3a1 ENSMUSG00000028081 155.40 1614.47 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
42. Rps26 ENSMUSG00000025362 153.75 1597.32 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
43. Gm26924 Gm26924 152.92 1588.70
44. Atp5g3 ENSMUSG00000018770 149.61 1554.31 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Tuba1b ENSMUSG00000023004 149.61 1554.31 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
46. Pabpc1 ENSMUSG00000022283 147.96 1537.17 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
47. Tpt1 ENSMUSG00000060126 143.83 1494.26 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
48. Eef1b2 ENSMUSG00000025967 143.00 1485.64 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Rps4x ENSMUSG00000031320 141.35 1468.50 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
50. Ubb ENSMUSG00000019505 141.35 1468.50 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
51. Ran ENSMUSG00000029430 138.04 1434.11 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
52. Hnrnpc ENSMUSG00000060373 131.43 1365.44 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
53. Rpl4 ENSMUSG00000032399 128.95 1339.67 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
54. Rps20 ENSMUSG00000028234 128.95 1339.67 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Son ENSMUSG00000022961 126.47 1313.91 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
56. Rplp1 ENSMUSG00000007892 114.90 1193.71 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
57. Rpl32 ENSMUSG00000057841 113.24 1176.46 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
58. Rpl37 ENSMUSG00000041841 112.42 1167.94 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
59. Ldha ENSMUSG00000063229 105.80 1099.17 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
60. 2810417H13Rik 104.98 1090.65 RIKEN cDNA 2810417H13 gene
61. Map1b ENSMUSG00000052727 104.98 1090.65 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
62. Pcbp1 ENSMUSG00000051695 104.15 1082.02 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
63. Tubb2b ENSMUSG00000045136 101.67 1056.26 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
64. Rpl39-ps ENSMUSG00000036305 100.02 1039.12 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
65. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 99.19 1030.49 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
66. Rps5 ENSMUSG00000012848 98.36 1021.87 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
67. Grb10 ENSMUSG00000020176 97.54 1013.35 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
68. Peg3 ENSMUSG00000002265 96.71 1004.73 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
69. Hmgn1 ENSMUSG00000040681 95.88 996.11 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
70. Marcks ENSMUSG00000069662 95.88 996.11 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
71. Pbx1 ENSMUSG00000052534 95.88 996.11 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
72. Hnrnpa2b1 ENSMUSG00000004980 94.23 978.96 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
73. H3f3b ENSMUSG00000016559 90.92 944.58 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
74. Marcksl1 ENSMUSG00000047945 90.92 944.58 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
75. Serbp1 ENSMUSG00000036371 90.10 936.06 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
76. Gm14303 ENSMUSG00000081344 89.27 927.43 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
77. Calm1 ENSMUSG00000001175 87.62 910.29 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
78. Ywhab ENSMUSG00000018326 87.62 910.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
79. Rps9 ENSMUSG00000006333 86.79 901.67 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
80. Rpl8 ENSMUSG00000003970 85.14 884.53 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
81. Hnrnph1 ENSMUSG00000007850 83.49 867.39 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
82. Rpl18a ENSMUSG00000045128 83.49 867.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
83. Top2a ENSMUSG00000020914 83.49 867.39 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
84. Banf1 ENSMUSG00000024844 82.66 858.76 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
85. Rrm2 ENSMUSG00000020649 81.83 850.14 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
86. Cox8a ENSMUSG00000035885 81.01 841.62 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
87. Ywhaz ENSMUSG00000022285 80.18 833.00 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
88. Gm5963 ENSMUSG00000052192 79.35 824.37 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
89. U2af2 ENSMUSG00000030435 79.35 824.37 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
90. Ccnd2 ENSMUSG00000000184 78.53 815.86 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
91. Srsf3 ENSMUSG00000071172 78.53 815.86 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
92. Cdkn1c ENSMUSG00000037664 76.87 798.61 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
93. Slc25a5 ENSMUSG00000016319 76.87 798.61 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
94. Caprin1 ENSMUSG00000027184 76.05 790.09 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
95. Gm14586 ENSMUSG00000083621 76.05 790.09 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
96. Morf4l1 ENSMUSG00000062270 76.05 790.09 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
97. Ncl ENSMUSG00000026234 76.05 790.09 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
98. Rbm25 ENSMUSG00000010608 76.05 790.09 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
99. Gm15459 ENSMUSG00000100801 73.57 764.33 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
100. Nucks1 ENSMUSG00000026434 73.57 764.33 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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