Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice2, section s79.

Sample reads: 391,652. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. RPL41 ENSG00000229117 11023.48 28146.14 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
2. HIST1H4C ENSG00000197061 10481.48 26762.26 histone cluster 1 H4 family member c [Source:HGNC Symbol;Acc:HGNC:4787]
3. SFRP1 ENSG00000104332 6994.72 17859.55 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
4. RPS27 ENSG00000177954 6122.58 15632.72 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
5. EEF1A1 ENSG00000156508 5089.80 12995.74 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
6. RPL37 ENSG00000145592 3557.38 9083.02 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
7. COL3A1 ENSG00000168542 3264.32 8334.76 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
8. RPS12 ENSG00000112306 3234.31 8258.13 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
9. RPL31 ENSG00000071082 2939.48 7505.34 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
10. RPS23 ENSG00000186468 2747.04 7013.99 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
11. RPS29 ENSG00000213741 2589.92 6612.82 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
12. RPL34 ENSG00000109475 2411.61 6157.54 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
13. RPL23 ENSG00000125691 2231.53 5697.74 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
14. RPS15A ENSG00000134419 2231.53 5697.74 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
15. MALAT1 ENSG00000251562 2107.95 5382.21 metastasis associated lung adenocarcinoma transcript 1 [Source:HGNC Symbol;Acc:HGNC:29665]
16. RPL5 ENSG00000122406 2104.42 5373.19 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
17. RPL10A ENSG00000198755 1738.97 4440.09 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
18. ACTB ENSG00000075624 1698.36 4336.41 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
19. HBE1 ENSG00000213931 1666.59 4255.29 hemoglobin subunit epsilon 1 [Source:HGNC Symbol;Acc:HGNC:4830]
20. RPS3A ENSG00000145425 1638.34 4183.16 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
21. RPL30 ENSG00000156482 1597.73 4079.47 ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333]
22. TPT1 ENSG00000133112 1587.14 4052.43 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
23. PTMA ENSG00000187514 1562.42 3989.31 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
24. RPL9 ENSG00000163682 1495.34 3818.04 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
25. RPS27A ENSG00000143947 1486.51 3795.49 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
26. RPL15 ENSG00000174748 1467.09 3745.91 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
27. HMGB1 ENSG00000189403 1426.48 3642.22 high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]
28. PPIA ENSG00000196262 1380.58 3525.02 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
29. TUBA1B ENSG00000123416 1336.45 3412.34 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
30. RPS20 ENSG00000008988 1295.84 3308.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
31. ACTG1 ENSG00000184009 1234.05 3150.89 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
32. HMGA2 ENSG00000149948 1218.16 3110.32 high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
33. MTRNR2L1 ENSG00000256618 1196.98 3056.24 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
34. RPS7 ENSG00000171863 1159.90 2961.56 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
35. MTRNR2L8 ENSG00000255823 1124.59 2871.40 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
36. GNAS ENSG00000087460 1098.11 2803.79 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
37. TMSB4X ENSG00000205542 1091.05 2785.77 thymosin beta 4 X-linked [Source:HGNC Symbol;Acc:HGNC:11881]
38. NPM1 ENSG00000181163 1064.57 2718.16 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
39. EIF4G2 ENSG00000110321 1055.74 2695.61 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
40. HNRNPC ENSG00000092199 986.89 2519.82 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
41. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 974.53 2488.26 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
42. RPL11 ENSG00000142676 963.94 2461.22 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
43. RPS6 ENSG00000137154 949.81 2425.14 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
44. H2AFZ ENSG00000164032 940.99 2402.62 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
45. COX7A2 ENSG00000112695 937.45 2393.58 cytochrome c oxidase subunit 7A2 [Source:HGNC Symbol;Acc:HGNC:2288]
46. RPL26 ENSG00000161970 919.80 2348.52 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
47. ID2 ENSG00000115738 914.50 2334.98 inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]
48. NUCKS1 ENSG00000069275 893.32 2280.91 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:HGNC Symbol;Acc:HGNC:29923]
49. RPS13 ENSG00000110700 847.42 2163.71 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
50. RPL32 ENSG00000144713 836.82 2136.64 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
51. ZFP36L1 ENSG00000185650 792.69 2023.97 ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]
52. RPL35 ENSG00000136942 766.21 1956.36 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
53. VIM ENSG00000026025 746.79 1906.77 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
54. MORF4L1 ENSG00000185787 745.02 1902.25 mortality factor 4 like 1 [Source:HGNC Symbol;Acc:HGNC:16989]
55. RPL10 ENSG00000147403 729.13 1861.68 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
56. RPL7A ENSG00000148303, ENSG00000280858 725.60 1852.67 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
57. RPS25 ENSG00000118181, ENSG00000280831 681.46 1739.97 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
58. RPS16 ENSG00000105193 662.04 1690.38 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
59. HBG2 ENSG00000196565 639.09 1631.78 hemoglobin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:4832]
60. HNRNPK ENSG00000165119 628.50 1604.74 heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:HGNC:5044]
61. HSP90AA1 ENSG00000080824 628.50 1604.74 heat shock protein 90 alpha family class A member 1 [Source:HGNC Symbol;Acc:HGNC:5253]
62. HMGN1 ENSG00000205581 626.74 1600.25 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
63. RPL39 ENSG00000198918 619.67 1582.20 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
64. SOX4 ENSG00000124766 612.61 1564.17 SRY-box 4 [Source:HGNC Symbol;Acc:HGNC:11200]
65. HNRNPD ENSG00000138668 605.55 1546.14 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
66. RPL22 ENSG00000116251 603.78 1541.63 ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:10315]
67. RPL13AP20 ENSG00000234498 596.72 1523.60 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
68. PCBP1 ENSG00000169564 584.36 1492.04 poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8647]
69. RPL35A ENSG00000182899 549.06 1401.91 ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345]
70. RPS8 ENSG00000142937 547.29 1397.39 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
71. RPS24 ENSG00000138326 536.70 1370.35 ribosomal protein S24 [Source:HGNC Symbol;Acc:HGNC:10411]
72. PCBP2 ENSG00000197111 531.40 1356.82 poly(rC) binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8648]
73. RPL7 ENSG00000147604 529.64 1352.32 ribosomal protein L7 [Source:HGNC Symbol;Acc:HGNC:10363]
74. RPS11 ENSG00000142534 529.64 1352.32 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
75. PNISR ENSG00000132424 524.34 1338.79 PNN interacting serine and arginine rich protein [Source:HGNC Symbol;Acc:HGNC:21222]
76. RPS14 ENSG00000164587 524.34 1338.79 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
77. RPLP0 ENSG00000089157 513.75 1311.75 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
78. KCTD12 ENSG00000178695 504.92 1289.21 potassium channel tetramerization domain containing 12 [Source:HGNC Symbol;Acc:HGNC:14678]
79. H3F3B ENSG00000132475 499.62 1275.67 H3 histone family member 3B [Source:HGNC Symbol;Acc:HGNC:4765]
80. RPS28 ENSG00000233927 499.62 1275.67 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
81. RPS21 ENSG00000171858 494.33 1262.17 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
82. SRP14 ENSG00000140319 494.33 1262.17 signal recognition particle 14 [Source:HGNC Symbol;Acc:HGNC:11299]
83. ATRX ENSG00000085224 492.56 1257.65 ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
84. ENAH ENSG00000154380 481.97 1230.61 ENAH, actin regulator [Source:HGNC Symbol;Acc:HGNC:18271]
85. TOMM6 ENSG00000214736 480.20 1226.09 translocase of outer mitochondrial membrane 6 [Source:HGNC Symbol;Acc:HGNC:34528]
86. NAP1L1 ENSG00000187109 478.44 1221.60 nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
87. MARCKS ENSG00000277443 466.08 1190.04 myristoylated alanine rich protein kinase C substrate [Source:HGNC Symbol;Acc:HGNC:6759]
88. MDK ENSG00000110492 453.72 1158.48 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
89. CBX3 ENSG00000122565 448.42 1144.95 chromobox 3 [Source:HGNC Symbol;Acc:HGNC:1553]
90. RPS5 ENSG00000083845 444.89 1135.93 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
91. TCEA1 ENSG00000187735 443.13 1131.44 transcription elongation factor A1 [Source:HGNC Symbol;Acc:HGNC:11612]
92. HSP90B1 ENSG00000166598 432.54 1104.40 heat shock protein 90 beta family member 1 [Source:HGNC Symbol;Acc:HGNC:12028]
93. TMEM258 ENSG00000134825 432.54 1104.40 transmembrane protein 258 [Source:HGNC Symbol;Acc:HGNC:1164]
94. HDAC2 ENSG00000196591 430.77 1099.88 histone deacetylase 2 [Source:HGNC Symbol;Acc:HGNC:4853]
95. HSPA8 ENSG00000109971 427.24 1090.87 heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
96. SUMO2 ENSG00000188612 427.24 1090.87 small ubiquitin-like modifier 2 [Source:HGNC Symbol;Acc:HGNC:11125]
97. UBB ENSG00000170315 421.94 1077.34 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
98. RPS2 ENSG00000140988 420.18 1072.84 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
99. MYL6 ENSG00000092841 413.12 1054.82 myosin light chain 6 [Source:HGNC Symbol;Acc:HGNC:7587]
100. COX7C ENSG00000127184 409.58 1045.78 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA