Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice1, section s40.

Sample reads: 391,641. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. PTMA ENSG00000187514 9305.33 23759.87 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
2. EEF1A1 ENSG00000156508 4298.71 10976.16 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
3. RPL41 ENSG00000229117 3168.12 8089.35 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
4. ACTG1 ENSG00000184009 2696.18 6884.32 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
5. RPL5 ENSG00000122406 2341.21 5977.95 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
6. TUBA1B ENSG00000123416 2195.52 5605.96 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
7. PPIA ENSG00000196262 2121.66 5417.36 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
8. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 2006.75 5123.96 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
9. RPL15 ENSG00000174748 1820.03 4647.19 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
10. ACTB ENSG00000075624 1813.87 4631.47 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
11. RPS6 ENSG00000137154 1711.28 4369.52 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
12. GNAS ENSG00000087460 1651.77 4217.57 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
13. RPS20 ENSG00000008988 1635.36 4175.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
14. RPS5 ENSG00000083845 1532.76 3913.69 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
15. RPL13AP20 ENSG00000234498 1467.10 3746.04 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
16. RPL9 ENSG00000163682 1405.55 3588.88 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
17. RPS12 ENSG00000112306 1393.23 3557.42 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
18. MDK ENSG00000110492 1387.08 3541.72 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
19. RPL18A ENSG00000105640 1382.97 3531.22 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
20. GAPDH ENSG00000111640 1343.99 3431.69 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
21. RPL23 ENSG00000125691 1280.38 3269.27 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
22. RPL37 ENSG00000145592 1280.38 3269.27 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
23. STMN1 ENSG00000117632 1268.07 3237.84 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
24. VIM ENSG00000026025 1263.96 3227.35 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
25. TPT1 ENSG00000133112 1140.85 2913.00 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
26. MTRNR2L8 ENSG00000255823 1120.33 2860.61 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
27. RPS15A ENSG00000134419 1108.02 2829.18 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
28. RPL13 ENSG00000167526 1103.92 2818.71 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
29. RPL31 ENSG00000071082 1085.45 2771.55 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
30. NGFRAP1 NGFRAP1 1081.35 2761.08
31. RPS11 ENSG00000142534 1077.24 2750.58 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
32. HSP90AB1 ENSG00000096384 1075.19 2745.35 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
33. RPL34 ENSG00000109475 1042.36 2661.52 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
34. RPS8 ENSG00000142937 1025.95 2619.62 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
35. RPL7A ENSG00000148303, ENSG00000280858 1023.89 2614.36 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
36. NPM1 ENSG00000181163 1021.84 2609.13 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
37. RPS2 ENSG00000140988 974.65 2488.63 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
38. RPS27A ENSG00000143947 962.34 2457.20 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
39. RPL35 ENSG00000136942 950.03 2425.77 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
40. MTRNR2L1 ENSG00000256618 915.14 2336.68 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
41. RPS23 ENSG00000186468 896.68 2289.55 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
42. RPLP1 ENSG00000137818 884.36 2258.09 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
43. RPL10A ENSG00000198755 882.31 2252.86 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
44. RPL11 ENSG00000142676 843.33 2153.33 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
45. RPS27 ENSG00000177954 824.86 2106.17 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
46. NNAT ENSG00000053438 818.70 2090.44 neuronatin [Source:HGNC Symbol;Acc:HGNC:7860]
47. RPL10 ENSG00000147403 773.56 1975.18 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
48. RPL37A ENSG00000197756 763.30 1948.98 ribosomal protein L37a [Source:HGNC Symbol;Acc:HGNC:10348]
49. EIF4G2 ENSG00000110321 761.25 1943.75 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
50. IFITM2 ENSG00000185201 759.20 1938.51 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
51. RPS16 ENSG00000105193 757.15 1933.28 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPL6 ENSG00000089009 746.89 1907.08 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
53. RPL14 ENSG00000188846 744.84 1901.85 ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:10305]
54. UBB ENSG00000170315 742.78 1896.59 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
55. RPS14 ENSG00000164587 740.73 1891.35 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
56. RPS25 ENSG00000118181, ENSG00000280831 740.73 1891.35 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
57. RPL3 ENSG00000100316 736.63 1880.88 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
58. RPL29 ENSG00000162244 732.53 1870.41 ribosomal protein L29 [Source:HGNC Symbol;Acc:HGNC:10331]
59. HNRNPD ENSG00000138668 726.37 1854.69 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
60. RPS15 ENSG00000115268 709.95 1812.76 ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:10388]
61. CFL1 ENSG00000172757 707.90 1807.52 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
62. RPLP0 ENSG00000089157 685.33 1749.90 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
63. SOX4 ENSG00000124766 675.07 1723.70 SRY-box 4 [Source:HGNC Symbol;Acc:HGNC:11200]
64. HNRNPH1 ENSG00000169045, ENSG00000284254 658.66 1681.80 heterogeneous nuclear ribonucleoprotein H1 [Source:HGNC Symbol;Acc:HGNC:5041]
65. RPS7 ENSG00000171863 652.50 1666.07 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
66. HMGN1 ENSG00000205581 650.45 1660.83 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
67. HSPA8 ENSG00000109971 650.45 1660.83 heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
68. RPS13 ENSG00000110700 644.29 1645.11 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
69. HNRNPC ENSG00000092199 634.03 1618.91 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
70. RPS21 ENSG00000171858 631.98 1613.67 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
71. RBM3 ENSG00000102317 627.88 1603.20 RNA binding motif protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
72. COL3A1 ENSG00000168542 597.10 1524.61 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
73. PFN1 ENSG00000108518 597.10 1524.61 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
74. MARCKS ENSG00000277443 595.05 1519.38 myristoylated alanine rich protein kinase C substrate [Source:HGNC Symbol;Acc:HGNC:6759]
75. RPS28 ENSG00000233927 593.00 1514.14 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
76. RPS3A ENSG00000145425 586.84 1498.41 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
77. H2AFZ ENSG00000164032 576.58 1472.22 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
78. ATP5G2 564.27 1440.79 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9), transcript variant X3
79. ENO1 ENSG00000074800 551.96 1409.35 enolase 1 [Source:HGNC Symbol;Acc:HGNC:3350]
80. PBX1 ENSG00000185630 551.96 1409.35 PBX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8632]
81. SERF2 ENSG00000140264 549.91 1404.12 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
82. RPL32 ENSG00000144713 547.85 1398.86 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
83. RPS19 ENSG00000105372 545.80 1393.62 ribosomal protein S19 [Source:HGNC Symbol;Acc:HGNC:10402]
84. HMGA2 ENSG00000149948 537.60 1372.69 high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
85. RPL26 ENSG00000161970 529.39 1351.72 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
86. FTH1 ENSG00000167996 525.28 1341.23 ferritin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:3976]
87. DDX17 ENSG00000100201 521.18 1330.76 DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
88. HNRNPA1 ENSG00000135486 521.18 1330.76 heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
89. RPL18 ENSG00000063177 521.18 1330.76 ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:10310]
90. SRP14 ENSG00000140319 521.18 1330.76 signal recognition particle 14 [Source:HGNC Symbol;Acc:HGNC:11299]
91. RPS29 ENSG00000213741 519.13 1325.53 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
92. RPL4 ENSG00000174444 506.82 1294.09 ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:10353]
93. SRSF3 ENSG00000112081 504.77 1288.86 serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785]
94. RPL27A ENSG00000166441 500.66 1278.37 ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329]
95. IFITM3 ENSG00000142089 496.56 1267.90 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
96. RPL39 ENSG00000198918 490.40 1252.17 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
97. SRSF2 ENSG00000161547 490.40 1252.17 serine and arginine rich splicing factor 2 [Source:HGNC Symbol;Acc:HGNC:10783]
98. TPM4 ENSG00000167460 490.40 1252.17 tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]
99. RPL7 ENSG00000147604 482.19 1231.21 ribosomal protein L7 [Source:HGNC Symbol;Acc:HGNC:10363]
100. RPS14P3 465.78 1189.30 ribosomal protein S14 pseudogene 3
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA