Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice1, section s37.

Sample reads: 391,641. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. PTMA ENSG00000187514 10179.97 25993.08 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
2. EEF1A1 ENSG00000156508 4148.17 10591.75 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
3. RPL41 ENSG00000229117 3007.16 7678.35 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
4. RPL5 ENSG00000122406 2769.53 7071.59 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
5. ACTG1 ENSG00000184009 2558.10 6531.74 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
6. ACTB ENSG00000075624 2486.46 6348.82 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
7. RPS20 ENSG00000008988 2458.50 6277.42 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
8. PPIA ENSG00000196262 2264.55 5782.20 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
9. TUBA1B ENSG00000123416 2212.13 5648.35 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
10. RPL15 ENSG00000174748 1957.01 4996.94 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
11. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 1822.47 4653.41 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
12. RPS5 ENSG00000083845 1696.66 4332.18 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
13. RPS6 ENSG00000137154 1663.46 4247.40 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
14. MDK ENSG00000110492 1654.73 4225.11 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
15. RPS23 ENSG00000186468 1616.28 4126.94 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
16. RPL23 ENSG00000125691 1504.46 3841.42 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
17. GNAS ENSG00000087460 1474.75 3765.56 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
18. HSP90AB1 ENSG00000096384 1424.08 3636.18 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
19. RPS12 ENSG00000112306 1413.59 3609.40 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
20. RPL37 ENSG00000145592 1378.65 3520.18 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
21. RPL18A ENSG00000105640 1362.92 3480.02 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
22. GAPDH ENSG00000111640 1359.43 3471.11 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
23. RPL31 ENSG00000071082 1326.23 3386.34 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
24. RPL9 ENSG00000163682 1324.48 3381.87 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
25. RPS27A ENSG00000143947 1263.32 3225.71 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
26. RPS8 ENSG00000142937 1221.39 3118.64 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
27. STMN1 ENSG00000117632 1217.89 3109.71 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
28. RPS11 ENSG00000142534 1214.40 3100.79 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
29. MTRNR2L8 ENSG00000255823 1205.66 3078.48 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
30. VIM ENSG00000026025 1200.42 3065.10 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
31. NGFRAP1 NGFRAP1 1196.92 3056.16
32. RPS15A ENSG00000134419 1148.00 2931.25 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
33. RPL14 ENSG00000188846 1146.25 2926.78 ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:10305]
34. RPL10A ENSG00000198755 1142.76 2917.87 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
35. RPL34 ENSG00000109475 1111.30 2837.54 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
36. RPLP1 ENSG00000137818 1079.85 2757.24 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
37. RPL37A ENSG00000197756 1074.61 2743.86 ribosomal protein L37a [Source:HGNC Symbol;Acc:HGNC:10348]
38. RPS27 ENSG00000177954 1065.87 2721.55 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
39. IFITM2 ENSG00000185201 1058.88 2703.70 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
40. RPL7A ENSG00000148303, ENSG00000280858 1039.66 2654.62 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
41. MTRNR2L1 ENSG00000256618 1029.18 2627.86 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
42. TPT1 ENSG00000133112 1023.94 2614.48 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
43. RPL13 ENSG00000167526 1009.96 2578.79 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
44. CFL1 ENSG00000172757 938.32 2395.86 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
45. NPM1 ENSG00000181163 936.57 2391.40 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
46. RPS16 ENSG00000105193 894.64 2284.33 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
47. HNRNPD ENSG00000138668 880.66 2248.64 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
48. RPS7 ENSG00000171863 845.71 2159.40 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
49. RPL10 ENSG00000147403 838.72 2141.55 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
50. RPL35 ENSG00000136942 821.25 2096.94 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
51. HNRNPC ENSG00000092199 816.01 2083.56 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
52. RPL13AP20 ENSG00000234498 812.51 2074.63 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
53. UBB ENSG00000170315 795.04 2030.02 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
54. RPS15 ENSG00000115268 791.54 2021.08 ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:10388]
55. RPS14 ENSG00000164587 779.31 1989.86 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
56. HNRNPH1 ENSG00000169045, ENSG00000284254 770.57 1967.54 heterogeneous nuclear ribonucleoprotein H1 [Source:HGNC Symbol;Acc:HGNC:5041]
57. RPS21 ENSG00000171858 763.59 1949.72 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
58. TPM4 ENSG00000167460 747.86 1909.55 tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]
59. PFN1 ENSG00000108518 737.38 1882.79 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
60. RPL6 ENSG00000089009 735.63 1878.32 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
61. RPS2 ENSG00000140988 723.40 1847.10 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
62. RPL11 ENSG00000142676 721.65 1842.63 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
63. RPS25 ENSG00000118181, ENSG00000280831 716.41 1829.25 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
64. RPS13 ENSG00000110700 709.42 1811.40 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
65. RPS3A ENSG00000145425 709.42 1811.40 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
66. RPL29 ENSG00000162244 700.68 1789.09 ribosomal protein L29 [Source:HGNC Symbol;Acc:HGNC:10331]
67. RPS29 ENSG00000213741 700.68 1789.09 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
68. RPLP0 ENSG00000089157 691.94 1766.77 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
69. NNAT ENSG00000053438 686.70 1753.39 neuronatin [Source:HGNC Symbol;Acc:HGNC:7860]
70. RPL3 ENSG00000100316 681.46 1740.01 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
71. RBM3 ENSG00000102317 679.71 1735.54 RNA binding motif protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
72. HSPA8 ENSG00000109971 677.97 1731.10 heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
73. RPS28 ENSG00000233927 665.73 1699.85 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
74. MARCKS ENSG00000277443 662.24 1690.93 myristoylated alanine rich protein kinase C substrate [Source:HGNC Symbol;Acc:HGNC:6759]
75. RPL32 ENSG00000144713 650.01 1659.71 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
76. RPL26 ENSG00000161970 643.02 1641.86 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
77. RPS14P3 627.29 1601.69 ribosomal protein S14 pseudogene 3
78. SRSF3 ENSG00000112081 623.80 1592.78 serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785]
79. EIF4G2 ENSG00000110321 618.56 1579.40 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
80. H2AFZ ENSG00000164032 613.31 1566.00 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
81. HMGN1 ENSG00000205581 609.82 1557.09 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
82. IFITM3 ENSG00000142089 602.83 1539.24 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
83. HMGA2 ENSG00000149948 595.84 1521.39 high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
84. RPL38 ENSG00000172809 594.09 1516.92 ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC:10349]
85. RPL39 ENSG00000198918 592.35 1512.48 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
86. YWHAE ENSG00000108953, ENSG00000274474 588.85 1503.54 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon [Source:HGNC Symbol;Acc:HGNC:12851]
87. SRSF2 ENSG00000161547 581.86 1485.70 serine and arginine rich splicing factor 2 [Source:HGNC Symbol;Acc:HGNC:10783]
88. RPL4 ENSG00000174444 576.62 1472.32 ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:10353]
89. RPL18 ENSG00000063177 573.13 1463.40 ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:10310]
90. MARCKSL1 ENSG00000175130 567.88 1450.00 MARCKS like 1 [Source:HGNC Symbol;Acc:HGNC:7142]
91. RPL35A ENSG00000182899 552.16 1409.86 ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345]
92. COL3A1 ENSG00000168542 545.17 1392.01 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
93. ENO1 ENSG00000074800 529.44 1351.85 enolase 1 [Source:HGNC Symbol;Acc:HGNC:3350]
94. HNRNPA1 ENSG00000135486 524.20 1338.47 heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
95. SERF2 ENSG00000140264 518.96 1325.09 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
96. PKM ENSG00000067225 517.21 1320.62 pyruvate kinase M1/2 [Source:HGNC Symbol;Acc:HGNC:9021]
97. DDX17 ENSG00000100201 511.97 1307.24 DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
98. RAN ENSG00000132341 510.22 1302.77 RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9846]
99. ATP5G2 506.73 1293.86 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9), transcript variant X3
100. HNRNPA2B1 ENSG00000122566 499.74 1276.01 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA