Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s46.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5763.75 46391.58
2. gga-mir-3527 gga-mir-3527 3842.50 30927.72
3. MT-CO3 MT-CO3 3522.29 28350.40
4. MT-ND4 MT-ND4 3522.29 28350.40
5. MT-CYB MT-CYB 3202.09 25773.15
6. MT-CO1 MT-CO1 2561.67 20618.51
7. MT-ND5 MT-ND5 2561.67 20618.51
8. EEF1A EEF1A 2241.46 18041.18
9. MT-ND3 MT-ND3 1921.25 15463.86
10. GAPDH ENSGALG00000014442 1280.83 10309.21 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MDK ENSGALG00000008367 1280.83 10309.21 midkine [Source:NCBI gene;Acc:423196]
12. MT-ND1 MT-ND1 1280.83 10309.21
13. NME2 ENSGALG00000002932 1280.83 10309.21 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPS12 ENSGALG00000013990 1280.83 10309.21 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
15. COX7A2 ENSGALG00000015906 960.63 7731.97 cytochrome c oxidase subunit 7A2 [Source:NCBI gene;Acc:772260]
16. RPL14 ENSGALG00000043379 960.63 7731.97 ribosomal protein L14
17. RPL15 ENSGALG00000011290 960.63 7731.97 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPS15 ENSGALG00000015195 960.63 7731.97 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
19. RPS21 ENSGALG00000005338 960.63 7731.97 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
20. SF3B1 ENSGALG00000008038 960.63 7731.97 splicing factor 3b subunit 1 [Source:HGNC Symbol;Acc:HGNC:10768]
21. DCUN1D1 ENSGALG00000008807 640.42 5154.65 defective in cullin neddylation 1 domain containing 1 [Source:NCBI gene;Acc:424963]
22. EEF1B2 ENSGALG00000008590 640.42 5154.65 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
23. EIF3L ENSGALG00000012296 640.42 5154.65 eukaryotic translation initiation factor 3 subunit L [Source:NCBI gene;Acc:418033]
24. EIF4G2 ENSGALG00000005587 640.42 5154.65 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. ENSGALG00000009044 ENSGALG00000009044 640.42 5154.65
26. ENSGALG00000022570 ENSGALG00000022570 640.42 5154.65
27. ENSGALG00000028992 ENSGALG00000028992 640.42 5154.65
28. GGA.31975 GGA.31975 640.42 5154.65
29. GPATCH1 ENSGALG00000004839 640.42 5154.65 G-patch domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24658]
30. HMGN5 ENSGALG00000007131 640.42 5154.65 high mobility group nucleosome binding domain 5, transcript variant X1
31. LARP1 ENSGALG00000040109 640.42 5154.65 La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
32. MT-ND2 MT-ND2 640.42 5154.65
33. MT-ND4L MT-ND4L 640.42 5154.65
34. NDUFB9 ENSGALG00000042242 640.42 5154.65 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
35. PPP2R5C ENSGALG00000029996 640.42 5154.65 protein phosphatase 2 regulatory subunit B'gamma [Source:NCBI gene;Acc:423460]
36. RAD51AP1 ENSGALG00000017290 640.42 5154.65 RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]
37. RPL21 ENSGALG00000027035 640.42 5154.65 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
38. RPL23 ENSGALG00000001634 640.42 5154.65 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
39. RPL26 RPL26 640.42 5154.65
40. RPL36AL ENSGALG00000004952 640.42 5154.65 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
41. RPL38 ENSGALG00000001465 640.42 5154.65 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
42. RPL5 ENSGALG00000005922 640.42 5154.65 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
43. RPS6 ENSGALG00000015082 640.42 5154.65 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
44. RPS8 ENSGALG00000010124 640.42 5154.65 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
45. SAMHD1 ENSGALG00000001231 640.42 5154.65 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 [Source:NCBI gene;Acc:419125]
46. SLC25A6_1 ENSGALG00000016691 640.42 5154.65 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
47. TMSB4X ENSGALG00000026383 640.42 5154.65 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
48. ZC3H6 ENSGALG00000008269 640.42 5154.65 zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
49. ABL ABL 320.21 2577.32
50. ACAA2 ENSGALG00000031142 320.21 2577.32 acetyl-CoA acyltransferase 2 [Source:NCBI gene;Acc:426847]
51. ACL ACL 320.21 2577.32
52. ACTG1_1 ENSGALG00000001381 320.21 2577.32 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
53. ACTR10 ENSGALG00000012041 320.21 2577.32 actin-related protein 10 homolog [Source:NCBI gene;Acc:423543]
54. AKAP12 ENSGALG00000036240 320.21 2577.32 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
55. ALG2 ENSGALG00000013573 320.21 2577.32 ALG2, alpha-1,3/1,6-mannosyltransferase [Source:HGNC Symbol;Acc:HGNC:23159]
56. AP1M1 ENSGALG00000003959 320.21 2577.32 adaptor related protein complex 1 subunit mu 1 [Source:NCBI gene;Acc:420149]
57. APAF1 ENSGALG00000011531 320.21 2577.32 apoptotic peptidase activating factor 1 [Source:HGNC Symbol;Acc:HGNC:576]
58. ARL6IP1 ENSGALG00000006780 320.21 2577.32 ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:NCBI gene;Acc:416604]
59. ATP5C1 320.21 2577.32 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant X1
60. C10orf76 C10orf76 320.21 2577.32
61. C16ORF61 C16ORF61 320.21 2577.32
62. C3H6ORF120 C3H6ORF120 320.21 2577.32
63. CALM CALM 320.21 2577.32
64. CCNB2 ENSGALG00000004161 320.21 2577.32 cyclin B2 [Source:NCBI gene;Acc:415400]
65. CDC123 ENSGALG00000014038 320.21 2577.32 cell division cycle 123 [Source:HGNC Symbol;Acc:HGNC:16827]
66. CIAPIN1 ENSGALG00000029268 320.21 2577.32 cytokine induced apoptosis inhibitor 1 [Source:NCBI gene;Acc:415637]
67. CIB1 ENSGALG00000008302 320.21 2577.32 calcium and integrin binding 1 [Source:NCBI gene;Acc:770162]
68. CIRBP ENSGALG00000030918 320.21 2577.32 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
69. CKS1B ENSGALG00000028664 320.21 2577.32 CDC28 protein kinase regulatory subunit 1B [Source:NCBI gene;Acc:100134845]
70. CLTA ENSGALG00000015326 320.21 2577.32 clathrin light chain A [Source:NCBI gene;Acc:427284]
71. CNBP 320.21 2577.32 CCHC-type zinc finger nucleic acid binding protein, transcript variant X7
72. COG7 ENSGALG00000006156 320.21 2577.32 component of oligomeric golgi complex 7 [Source:NCBI gene;Acc:416578]
73. COMMD7 ENSGALG00000006630 320.21 2577.32 COMM domain containing 7 [Source:NCBI gene;Acc:419286]
74. COPB1 ENSGALG00000006015 320.21 2577.32 coatomer protein complex subunit beta 1 [Source:NCBI gene;Acc:423063]
75. COPB2 ENSGALG00000005357 320.21 2577.32 coatomer protein complex subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:2232]
76. COX4I1 320.21 2577.32 cytochrome c oxidase subunit 4I1, transcript variant X1
77. COX6A1 ENSGALG00000007205 320.21 2577.32 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
78. CSNK1D ENSGALG00000002719 320.21 2577.32 casein kinase 1 delta [Source:NCBI gene;Acc:417378]
79. CTBP1 ENSGALG00000039942 320.21 2577.32 C-terminal binding protein 1 [Source:NCBI gene;Acc:422904]
80. CTSO ENSGALG00000009373 320.21 2577.32 cathepsin O [Source:NCBI gene;Acc:422410]
81. CUTC ENSGALG00000037283 320.21 2577.32 cutC copper transporter [Source:NCBI gene;Acc:423829]
82. DACH1 ENSGALG00000037015 320.21 2577.32 dachshund family transcription factor 1 [Source:NCBI gene;Acc:373935]
83. DARS ENSGALG00000012355 320.21 2577.32 aspartyl-tRNA synthetase [Source:NCBI gene;Acc:424296]
84. DBNDD2 ENSGALG00000003921 320.21 2577.32 dysbindin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15881]
85. DCAF7 ENSGALG00000000510 320.21 2577.32 DDB1 and CUL4 associated factor 7 [Source:NCBI gene;Acc:771554]
86. DDX5 ENSGALG00000003532 320.21 2577.32 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
87. DERL3 ENSGALG00000005994 320.21 2577.32 derlin 3 [Source:NCBI gene;Acc:416934]
88. DHFR ENSGALG00000026757 320.21 2577.32 dihydrofolate reductase [Source:NCBI gene;Acc:427317]
89. DIP2C ENSGALG00000006652 320.21 2577.32 disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
90. DNAJC19 ENSGALG00000008852 320.21 2577.32 DnaJ heat shock protein family (Hsp40) member C19 [Source:HGNC Symbol;Acc:HGNC:30528]
91. DTD2 ENSGALG00000009978 320.21 2577.32 D-tyrosyl-tRNA deacylase 2 (putative) [Source:HGNC Symbol;Acc:HGNC:20277]
92. DYNC1H1 ENSGALG00000011330 320.21 2577.32 dynein cytoplasmic 1 heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2961]
93. DYRK2 ENSGALG00000009901 320.21 2577.32 dual specificity tyrosine phosphorylation regulated kinase 2 [Source:NCBI gene;Acc:427864]
94. EBNA1BP2 ENSGALG00000009045 320.21 2577.32 EBNA1 binding protein 2 [Source:HGNC Symbol;Acc:HGNC:15531]
95. EEF1D 320.21 2577.32 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. EEF2 ENSGALG00000033884 320.21 2577.32 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
97. EFNB2 ENSGALG00000029175 320.21 2577.32 ephrin B2 [Source:NCBI gene;Acc:395625]
98. EGLN1 ENSGALG00000041422 320.21 2577.32 egl-9 family hypoxia inducible factor 1 [Source:HGNC Symbol;Acc:HGNC:1232]
99. EIF3F ENSGALG00000005326 320.21 2577.32 eukaryotic translation initiation factor 3 subunit F
100. EIF4A3 ENSGALG00000008530 320.21 2577.32 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA