Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s8.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6689.90 53846.15
2. MT-CO1 MT-CO1 4778.50 38461.54
3. MT-CO3 MT-CO3 4778.50 38461.54
4. MT-ND4 MT-ND4 4778.50 38461.54
5. MT-ND3 MT-ND3 3822.80 30769.23
6. MT-CYB MT-CYB 2867.10 23076.92
7. RPL23A ENSGALG00000003966 2867.10 23076.92 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
8. ACADSB ENSGALG00000041417 1911.40 15384.62 acyl-CoA dehydrogenase short/branched chain [Source:NCBI gene;Acc:423947]
9. CCNB2 ENSGALG00000004161 1911.40 15384.62 cyclin B2 [Source:NCBI gene;Acc:415400]
10. GAPDH ENSGALG00000014442 1911.40 15384.62 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. PUM2 ENSGALG00000016481 1911.40 15384.62 pumilio RNA binding family member 2 [Source:NCBI gene;Acc:421961]
12. RGP1 ENSGALG00000002394 1911.40 15384.62 RGP1 homolog, RAB6A GEF complex partner 1 [Source:NCBI gene;Acc:431658]
13. RPL31 ENSGALG00000016775 1911.40 15384.62 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
14. RPS21 ENSGALG00000005338 1911.40 15384.62 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
15. RTF1 ENSGALG00000008595 1911.40 15384.62 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:28996]
16. AIFM1 ENSGALG00000004003 955.70 7692.31 apoptosis inducing factor mitochondria associated 1 [Source:NCBI gene;Acc:428688]
17. ATP2B4 ENSGALG00000003601 955.70 7692.31 ATPase plasma membrane Ca2+ transporting 4 [Source:HGNC Symbol;Acc:HGNC:817]
18. ATP6V0C ENSGALG00000009229 955.70 7692.31 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
19. ATP6V1E1 ENSGALG00000013036 955.70 7692.31 ATPase H+ transporting V1 subunit E1 [Source:NCBI gene;Acc:418162]
20. CFC1 ENSGALG00000012623 955.70 7692.31 cripto, FRL-1, cryptic family 1 [Source:NCBI gene;Acc:395437]
21. CHCHD2 ENSGALG00000002495 955.70 7692.31 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
22. CNN3 ENSGALG00000005597 955.70 7692.31 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
23. COPS5 ENSGALG00000030843 955.70 7692.31 COP9 signalosome subunit 5 [Source:NCBI gene;Acc:426579]
24. CUX1_1 ENSGALG00000021636 955.70 7692.31 cut like homeobox 1 [Source:NCBI gene;Acc:101749861]
25. DAP ENSGALG00000013002 955.70 7692.31 death associated protein [Source:NCBI gene;Acc:420923]
26. DDX3X ENSGALG00000016231 955.70 7692.31 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
27. DSTN ENSGALG00000008667 955.70 7692.31 destrin, actin depolymerizing factor [Source:NCBI gene;Acc:396539]
28. EEF1D 955.70 7692.31 eukaryotic translation elongation factor 1 delta, transcript variant X13
29. EEF2 ENSGALG00000033884 955.70 7692.31 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
30. EIF1 ENSGALG00000028517 955.70 7692.31 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
31. EIF3H ENSGALG00000040522 955.70 7692.31 eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
32. EIF4G2 ENSGALG00000005587 955.70 7692.31 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
33. FKBP4 ENSGALG00000014331 955.70 7692.31 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
34. GPBP1L1 ENSGALG00000010276 955.70 7692.31 GC-rich promoter binding protein 1 like 1 [Source:NCBI gene;Acc:424603]
35. H2AFZ ENSGALG00000014023 955.70 7692.31 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
36. HNRNPAB ENSGALG00000014381 955.70 7692.31 heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:396268]
37. HP1BP3 ENSGALG00000010079 955.70 7692.31 heterochromatin protein 1 binding protein 3 [Source:NCBI gene;Acc:425543]
38. HSP90AA1 ENSGALG00000033212 955.70 7692.31 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
39. IDH1 ENSGALG00000008818 955.70 7692.31 isocitrate dehydrogenase (NADP(+)) 1, cytosolic [Source:HGNC Symbol;Acc:HGNC:5382]
40. IPO7 ENSGALG00000005807 955.70 7692.31 importin 7 [Source:HGNC Symbol;Acc:HGNC:9852]
41. KDM2B ENSGALG00000004225 955.70 7692.31 lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
42. KIAA1143 ENSGALG00000035952 955.70 7692.31 KIAA1143 [Source:NCBI gene;Acc:420709]
43. MAPK6 ENSGALG00000031448 955.70 7692.31 mitogen-activated protein kinase 6 [Source:NCBI gene;Acc:415419]
44. MAU2 ENSGALG00000002969 955.70 7692.31 MAU2 sister chromatid cohesion factor [Source:HGNC Symbol;Acc:HGNC:29140]
45. MEIS1 ENSGALG00000041626 955.70 7692.31 Meis homeobox 1 [Source:NCBI gene;Acc:395589]
46. MEIS2 ENSGALG00000039118 955.70 7692.31 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
47. MPHOSPH6 ENSGALG00000031983 955.70 7692.31 M-phase phosphoprotein 6 [Source:NCBI gene;Acc:415811]
48. MT-ND5 MT-ND5 955.70 7692.31
49. MYH10 ENSGALG00000001183 955.70 7692.31 myosin, heavy chain 10, non-muscle [Source:NCBI gene;Acc:396465]
50. MYLK ENSGALG00000011708 955.70 7692.31 Gallus gallus myosin light chain kinase (MYLK), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001322361]
51. N6AMT2 N6AMT2 955.70 7692.31
52. NDUFA5 ENSGALG00000008821 955.70 7692.31 NADH:ubiquinone oxidoreductase subunit A5 [Source:NCBI gene;Acc:417753]
53. NDUFB9 ENSGALG00000042242 955.70 7692.31 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
54. NME2 ENSGALG00000002932 955.70 7692.31 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
55. NR2F1 ENSGALG00000027907 955.70 7692.31 nuclear receptor subfamily 2 group F member 1 [Source:HGNC Symbol;Acc:HGNC:7975]
56. NUBP2 ENSGALG00000002316 955.70 7692.31 nucleotide binding protein 2 [Source:NCBI gene;Acc:416402]
57. NUDT21 ENSGALG00000003084 955.70 7692.31 nudix hydrolase 21 [Source:NCBI gene;Acc:100858636]
58. PARVB ENSGALG00000014201 955.70 7692.31 parvin beta [Source:HGNC Symbol;Acc:HGNC:14653]
59. PHB2 ENSGALG00000014567 955.70 7692.31 prohibitin 2 [Source:NCBI gene;Acc:771124]
60. PLEKHH2 ENSGALG00000009947 955.70 7692.31 pleckstrin homology, MyTH4 and FERM domain containing H2 [Source:HGNC Symbol;Acc:HGNC:30506]
61. PPIA ENSGALG00000028600 955.70 7692.31 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
62. PRDX3 ENSGALG00000009369 955.70 7692.31 peroxiredoxin 3 [Source:HGNC Symbol;Acc:HGNC:9354]
63. PRKCI ENSGALG00000009364 955.70 7692.31 protein kinase C iota [Source:NCBI gene;Acc:424991]
64. RAB7A ENSGALG00000005902 955.70 7692.31 RAB7A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9788]
65. RBX1 ENSGALG00000011993 955.70 7692.31 ring-box 1 [Source:NCBI gene;Acc:418001]
66. RPL23 ENSGALG00000001634 955.70 7692.31 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
67. RPL24 ENSGALG00000015339 955.70 7692.31 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
68. RPL27A ENSGALG00000005948 955.70 7692.31 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
69. RPL30 ENSGALG00000029897 955.70 7692.31 ribosomal protein L30 [Source:NCBI gene;Acc:425416]
70. RPL35A ENSGALG00000007611, ENSGALG00000041230 955.70 7692.31 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
71. RPL4 ENSGALG00000007711 955.70 7692.31 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
72. RPL7 ENSGALG00000035252 955.70 7692.31 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
73. RPL8 ENSGALG00000016232 955.70 7692.31 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
74. RPS15A ENSGALG00000006771 955.70 7692.31 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
75. RPS16 ENSGALG00000026490 955.70 7692.31 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
76. RPS23 ENSGALG00000015617 955.70 7692.31 ribosomal protein S23
77. RPS6 ENSGALG00000015082 955.70 7692.31 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
78. RRM1 ENSGALG00000017350 955.70 7692.31 ribonucleotide reductase catalytic subunit M1 [Source:NCBI gene;Acc:419081]
79. S100A11 ENSGALG00000036711 955.70 7692.31 S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
80. SEC11C ENSGALG00000031663 955.70 7692.31 SEC11 homolog C, signal peptidase complex subunit [Source:HGNC Symbol;Acc:HGNC:23400]
81. SEC61B ENSGALG00000013569 955.70 7692.31 Sec61 translocon beta subunit [Source:NCBI gene;Acc:420997]
82. SIAH1 ENSGALG00000003916 955.70 7692.31 siah E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:10857]
83. SMC3 ENSGALG00000008585 955.70 7692.31 structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
84. SNW1 ENSGALG00000010501 955.70 7692.31 SNW domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16696]
85. STAM ENSGALG00000035287 955.70 7692.31 signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
86. TCEB3 ENSGALG00000034625 955.70 7692.31 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
87. TOMM5 ENSGALG00000026300 955.70 7692.31 translocase of outer mitochondrial membrane 5
88. TTR ENSGALG00000015143 955.70 7692.31 transthyretin [Source:NCBI gene;Acc:396277]
89. TXN ENSGALG00000015704 955.70 7692.31 thioredoxin [Source:NCBI gene;Acc:396437]
90. TYW3 ENSGALG00000032549 955.70 7692.31 tRNA-yW synthesizing protein 3 homolog [Source:NCBI gene;Acc:424720]
91. U2AF1 ENSGALG00000016198 955.70 7692.31 U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene;Acc:395370]
92. UBB ENSGALG00000004509 955.70 7692.31 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
93. YTHDF2 ENSGALG00000034831 955.70 7692.31 YTH N6-methyladenosine RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:31675]
94. YWHAH ENSGALG00000006743 955.70 7692.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta [Source:NCBI gene;Acc:416955]
95. ZFAND1 ENSGALG00000042794 955.70 7692.31 zinc finger AN1-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25858]
96. ZFAND5 ENSGALG00000015144 955.70 7692.31 zinc finger AN1-type containing 5 [Source:NCBI gene;Acc:427254]
97. gga-mir-3527 gga-mir-3527 955.70 7692.31
98. 5 5 0.00 0.00
99. 5-MCDG 5-MCDG 0.00 0.00
100. 5S 5S 0.00 0.00
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA