Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s5.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 10736.87 86419.69
2. MT-ATP6 MT-ATP6 6135.35 49382.64
3. DNAJC2 ENSGALG00000008249 3067.68 24691.36 DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
4. MT-CO1 MT-CO1 3067.68 24691.36
5. TCOF1 ENSGALG00000005535 3067.68 24691.36 treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
6. ALYREF ENSGALG00000007237 1533.84 12345.68 Aly/REF export factor [Source:NCBI gene;Acc:769169]
7. ATOX1 ENSGALG00000004176 1533.84 12345.68 antioxidant 1 copper chaperone [Source:NCBI gene;Acc:770231]
8. C5H11ORF58 C5H11ORF58 1533.84 12345.68
9. C5ORF13 C5ORF13 1533.84 12345.68
10. CALM CALM 1533.84 12345.68
11. CCDC85A ENSGALG00000043080 1533.84 12345.68 coiled-coil domain containing 85A [Source:HGNC Symbol;Acc:HGNC:29400]
12. CCNG1 ENSGALG00000001718 1533.84 12345.68 cyclin G1 [Source:HGNC Symbol;Acc:HGNC:1592]
13. COL1A2 ENSGALG00000009641 1533.84 12345.68 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
14. COPS3 ENSGALG00000004834 1533.84 12345.68 COP9 signalosome subunit 3 [Source:NCBI gene;Acc:416504]
15. COQ9 ENSGALG00000001184 1533.84 12345.68 coenzyme Q9 [Source:NCBI gene;Acc:415636]
16. COX4I1 1533.84 12345.68 cytochrome c oxidase subunit 4I1, transcript variant X1
17. DHX15 ENSGALG00000014395 1533.84 12345.68 DEAH-box helicase 15 [Source:NCBI gene;Acc:422813]
18. ENSGALG00000002595 ENSGALG00000002595 1533.84 12345.68
19. ENSGALG00000007210 ENSGALG00000007210 1533.84 12345.68
20. ENSGALG00000016007 ENSGALG00000016007 1533.84 12345.68
21. ETF1 ENSGALG00000002262 1533.84 12345.68 eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
22. ETFA ENSGALG00000002925 1533.84 12345.68 electron-transfer-flavoprotein, alpha polypeptide [Source:NCBI gene;Acc:415353]
23. FAM63A 1533.84 12345.68 family with sequence similarity 63 member A, transcript variant X2
24. FIG4 ENSGALG00000015070 1533.84 12345.68 FIG4 phosphoinositide 5-phosphatase [Source:NCBI gene;Acc:421762]
25. GAPDH ENSGALG00000014442 1533.84 12345.68 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
26. GCSH ENSGALG00000032679 1533.84 12345.68 glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
27. GSTA GSTA 1533.84 12345.68
28. HMGB1 ENSGALG00000042875 1533.84 12345.68 high mobility group box 1 [Source:NCBI gene;Acc:395724]
29. HSPA8 ENSGALG00000006512 1533.84 12345.68 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
30. ITGB1BP3 ENSGALG00000030120 1533.84 12345.68 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
31. LGALS3 ENSGALG00000012173 1533.84 12345.68 galectin 3 [Source:NCBI gene;Acc:373917]
32. LOC419404 ENSGALG00000021676 1533.84 12345.68 uncharacterized LOC419404
33. MDK ENSGALG00000008367 1533.84 12345.68 midkine [Source:NCBI gene;Acc:423196]
34. MT-CYB MT-CYB 1533.84 12345.68
35. MT-ND1 MT-ND1 1533.84 12345.68
36. MT-ND3 MT-ND3 1533.84 12345.68
37. MT-ND4 MT-ND4 1533.84 12345.68
38. MT-ND5 MT-ND5 1533.84 12345.68
39. NOL6 ENSGALG00000030730 1533.84 12345.68 nucleolar protein 6
40. PAK1IP1 ENSGALG00000012724 1533.84 12345.68 PAK1 interacting protein 1 [Source:NCBI gene;Acc:420850]
41. PAPOLA ENSGALG00000033099 1533.84 12345.68 poly(A) polymerase alpha [Source:NCBI gene;Acc:395878]
42. PLK1 ENSGALG00000006110 1533.84 12345.68 polo like kinase 1 [Source:NCBI gene;Acc:416575]
43. PTP4A1 ENSGALG00000016271 1533.84 12345.68 protein tyrosine phosphatase type IVA, member 1 [Source:NCBI gene;Acc:421877]
44. RPL14 ENSGALG00000043379 1533.84 12345.68 ribosomal protein L14
45. RPL15 ENSGALG00000011290 1533.84 12345.68 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
46. RPL26 RPL26 1533.84 12345.68
47. RPL37A ENSGALG00000011472 1533.84 12345.68 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
48. RPL7A ENSGALG00000003197 1533.84 12345.68 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
49. RPS15 ENSGALG00000015195 1533.84 12345.68 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. RPS23 ENSGALG00000015617 1533.84 12345.68 ribosomal protein S23
51. RPS4 RPS4 1533.84 12345.68
52. SF3B1 ENSGALG00000008038 1533.84 12345.68 splicing factor 3b subunit 1 [Source:HGNC Symbol;Acc:HGNC:10768]
53. SFRP1 ENSGALG00000003473 1533.84 12345.68 secreted frizzled related protein 1 [Source:NCBI gene;Acc:395237]
54. SH3BGRL ENSGALG00000007128 1533.84 12345.68 SH3 domain binding glutamate rich protein like [Source:NCBI gene;Acc:422277]
55. SMC3 ENSGALG00000008585 1533.84 12345.68 structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
56. SNRPG ENSGALG00000028409 1533.84 12345.68 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
57. SUCLG1 ENSGALG00000015961 1533.84 12345.68 succinate-CoA ligase alpha subunit [Source:NCBI gene;Acc:422932]
58. SUMO1 ENSGALG00000008435 1533.84 12345.68 small ubiquitin-like modifier 1 [Source:NCBI gene;Acc:373930]
59. TCEB1 TCEB1 1533.84 12345.68
60. TOMM70A TOMM70A 1533.84 12345.68
61. TXN ENSGALG00000015704 1533.84 12345.68 thioredoxin [Source:NCBI gene;Acc:396437]
62. TXNRD3 ENSGALG00000039363 1533.84 12345.68 thioredoxin reductase 3 [Source:NCBI gene;Acc:416031]
63. U2AF1 ENSGALG00000016198 1533.84 12345.68 U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene;Acc:395370]
64. UQCR11 ENSGALG00000001096 1533.84 12345.68 ubiquinol-cytochrome c reductase, complex III subunit XI [Source:NCBI gene;Acc:770135]
65. UTRN ENSGALG00000012256 1533.84 12345.68 utrophin [Source:HGNC Symbol;Acc:HGNC:12635]
66. YWHAB ENSGALG00000004143 1533.84 12345.68 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta [Source:NCBI gene;Acc:419190]
67. ZFP161 ZFP161 1533.84 12345.68
68. gga-mir-3526 ENSGALG00000029121 1533.84 12345.68 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
69. gga-mir-3527 gga-mir-3527 1533.84 12345.68
70. 5 5 0.00 0.00
71. 5-MCDG 5-MCDG 0.00 0.00
72. 5S 5S 0.00 0.00
73. 5S_1 5S_1 0.00 0.00
74. 5S_2 5S_2 0.00 0.00
75. 7SK 7SK 0.00 0.00
76. 7SK_1 7SK_1 0.00 0.00
77. 7SK_2 7SK_2 0.00 0.00
78. A1CF ENSGALG00000003765 0.00 0.00 APOBEC1 complementation factor [Source:HGNC Symbol;Acc:HGNC:24086]
79. A2ML2 ENSGALG00000014252 0.00 0.00 alpha-2-macroglobulin-like 2, transcript variant X6
80. A4GNT ENSGALG00000006600 0.00 0.00 alpha-1,4-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:17968]
81. AACS ENSGALG00000002899 0.00 0.00 acetoacetyl-CoA synthetase [Source:NCBI gene;Acc:416811]
82. AADAC ENSGALG00000010364 0.00 0.00 arylacetamide deacetylase [Source:HGNC Symbol;Acc:HGNC:17]
83. AADAT ENSGALG00000009655 0.00 0.00 aminoadipate aminotransferase [Source:HGNC Symbol;Acc:HGNC:17929]
84. AAED1 0.00 0.00 AhpC/TSA antioxidant enzyme domain containing 1
85. AAGAB ENSGALG00000007887 0.00 0.00 alpha- and gamma-adaptin binding protein [Source:NCBI gene;Acc:415553]
86. AAK1 ENSGALG00000041911 0.00 0.00 AP2 associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:19679]
87. AAMP ENSGALG00000011445 0.00 0.00 angio associated migratory cell protein [Source:NCBI gene;Acc:769880]
88. AANAT ENSGALG00000001955 0.00 0.00 aralkylamine N-acetyltransferase [Source:NCBI gene;Acc:396066]
89. AARS ENSGALG00000001965 0.00 0.00 alanyl-tRNA synthetase [Source:NCBI gene;Acc:415668]
90. AARS2 ENSGALG00000035337 0.00 0.00 alanyl-tRNA synthetase 2, mitochondrial [Source:NCBI gene;Acc:421436]
91. AARSD1 ENSGALG00000002880 0.00 0.00 Gallus gallus alanyl-tRNA synthetase domain containing 1 (AARSD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001328355]
92. AASDH ENSGALG00000013764 0.00 0.00 aminoadipate-semialdehyde dehydrogenase [Source:HGNC Symbol;Acc:HGNC:23993]
93. AASDHPPT ENSGALG00000027981 0.00 0.00 aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:NCBI gene;Acc:418975]
94. AASS ENSGALG00000008953 0.00 0.00 aminoadipate-semialdehyde synthase [Source:HGNC Symbol;Acc:HGNC:17366]
95. AATF ENSGALG00000005420 0.00 0.00 apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
96. AATK ENSGALG00000006901 0.00 0.00 apoptosis associated tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:21]
97. ABAT ENSGALG00000007334 0.00 0.00 4-aminobutyrate aminotransferase [Source:HGNC Symbol;Acc:HGNC:23]
98. ABCA1 ENSGALG00000015433 0.00 0.00 ATP-binding cassette, sub-family A (ABC1), member 1 [Source:NCBI gene;Acc:373945]
99. ABCA12 ENSGALG00000003553 0.00 0.00 ATP binding cassette subfamily A member 12 [Source:HGNC Symbol;Acc:HGNC:14637]
100. ABCA2 ENSGALG00000036894 0.00 0.00 ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA