Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s2.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6188.24 49808.30
2. MT-ND5 MT-ND5 6188.24 49808.30
3. MT-CO3 MT-CO3 4760.19 38314.12
4. MT-ND4 MT-ND4 3808.15 30651.28
5. MT-ND3 MT-ND3 2856.11 22988.44
6. HBG1 HBG1 2380.09 19157.02
7. EEF1A EEF1A 1904.08 15325.68
8. GAPDH ENSGALG00000014442 1904.08 15325.68 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. HBE 1904.08 15325.68 hemoglobin subunit epsilon
10. MT-ND1 MT-ND1 1904.08 15325.68
11. MT-CYB MT-CYB 1428.06 11494.26
12. PRDX1 ENSGALG00000010243 1428.06 11494.26 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
13. gga-mir-3527 gga-mir-3527 1428.06 11494.26
14. ACTR6 ENSGALG00000040976 952.04 7662.84 ARP6 actin-related protein 6 homolog [Source:NCBI gene;Acc:395348]
15. ANLN 952.04 7662.84 anillin actin binding protein, transcript variant X2
16. APITD1 APITD1 952.04 7662.84
17. BUB3 ENSGALG00000009681 952.04 7662.84 BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
18. CCT5 ENSGALG00000013041 952.04 7662.84 chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
19. CNBP 952.04 7662.84 CCHC-type zinc finger nucleic acid binding protein, transcript variant X7
20. EIF4G2 ENSGALG00000005587 952.04 7662.84 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. MMADHC ENSGALG00000012473 952.04 7662.84 methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
22. MT-CO1 MT-CO1 952.04 7662.84
23. NDUFB9 ENSGALG00000042242 952.04 7662.84 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
24. NME2 ENSGALG00000002932 952.04 7662.84 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
25. PRDX3 ENSGALG00000009369 952.04 7662.84 peroxiredoxin 3 [Source:HGNC Symbol;Acc:HGNC:9354]
26. PSMD13 ENSGALG00000043684 952.04 7662.84 proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
27. RPL27A ENSGALG00000005948 952.04 7662.84 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPL37 ENSGALG00000014833 952.04 7662.84 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
29. RPS29 ENSGALG00000012229 952.04 7662.84 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
30. SNAPIN ENSGALG00000026796 952.04 7662.84 SNAP associated protein [Source:HGNC Symbol;Acc:HGNC:17145]
31. ABRACL ENSGALG00000013826 476.02 3831.42 ABRA C-terminal like [Source:NCBI gene;Acc:770205]
32. ARGLU1 ENSGALG00000016855 476.02 3831.42 arginine and glutamate rich 1 [Source:NCBI gene;Acc:418765]
33. ATP2A2 ENSGALG00000032287 476.02 3831.42 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 [Source:NCBI gene;Acc:396446]
34. ATP6V0C ENSGALG00000009229 476.02 3831.42 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
35. ATPAF2 ENSGALG00000004926 476.02 3831.42 ATP synthase mitochondrial F1 complex assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:18802]
36. BRIX1 ENSGALG00000003373 476.02 3831.42 BRX1, biogenesis of ribosomes [Source:NCBI gene;Acc:427433]
37. BTF3 ENSGALG00000013512 476.02 3831.42 basic transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:1125]
38. C6H10ORF32 C6H10ORF32 476.02 3831.42
39. CCAR1 ENSGALG00000004108 476.02 3831.42 cell division cycle and apoptosis regulator 1 [Source:HGNC Symbol;Acc:HGNC:24236]
40. CCDC90B ENSGALG00000037072 476.02 3831.42 coiled-coil domain containing 90B [Source:HGNC Symbol;Acc:HGNC:28108]
41. CCT4 ENSGALG00000008812 476.02 3831.42 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
42. CDC27 ENSGALG00000000596 476.02 3831.42 cell division cycle 27 [Source:NCBI gene;Acc:419960]
43. CDC5L ENSGALG00000016704 476.02 3831.42 cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
44. CHL1 ENSGALG00000037856 476.02 3831.42 cell adhesion molecule L1 like [Source:HGNC Symbol;Acc:HGNC:1939]
45. CHPKCI CHPKCI 476.02 3831.42
46. CIRBP ENSGALG00000030918 476.02 3831.42 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
47. CKAP4 ENSGALG00000012659 476.02 3831.42 cytoskeleton associated protein 4 [Source:HGNC Symbol;Acc:HGNC:16991]
48. COMMD8 ENSGALG00000026279 476.02 3831.42 COMM domain containing 8 [Source:NCBI gene;Acc:422769]
49. CRAC1A CRAC1A 476.02 3831.42
50. CRHOA CRHOA 476.02 3831.42
51. CSDE1 ENSGALG00000002139 476.02 3831.42 cold shock domain containing E1 [Source:NCBI gene;Acc:419886]
52. CTNNBL1 ENSGALG00000006817 476.02 3831.42 catenin beta like 1 [Source:HGNC Symbol;Acc:HGNC:15879]
53. DCTN3 ENSGALG00000021365 476.02 3831.42 dynactin subunit 3 [Source:NCBI gene;Acc:427404]
54. DDX18 ENSGALG00000012147 476.02 3831.42 DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
55. DIS3 ENSGALG00000016930 476.02 3831.42 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:20604]
56. DNAJC10 ENSGALG00000008862 476.02 3831.42 DnaJ heat shock protein family (Hsp40) member C10 [Source:HGNC Symbol;Acc:HGNC:24637]
57. EIF4A3 ENSGALG00000008530 476.02 3831.42 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
58. ENO1 ENSGALG00000002377 476.02 3831.42 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
59. ENSGALG00000000360 ENSGALG00000000360 476.02 3831.42
60. ENSGALG00000002696 ENSGALG00000002696 476.02 3831.42
61. ENSGALG00000006730 ENSGALG00000006730 476.02 3831.42
62. ENSGALG00000013825 ENSGALG00000013825 476.02 3831.42
63. EPHA3 ENSGALG00000015403 476.02 3831.42 EPH receptor A3 [Source:NCBI gene;Acc:396402]
64. EXOSC7 ENSGALG00000030084 476.02 3831.42 exosome component 7 [Source:NCBI gene;Acc:420704]
65. EZH2 ENSGALG00000043399 476.02 3831.42 enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]
66. FGD5 ENSGALG00000008546 476.02 3831.42 FYVE, RhoGEF and PH domain containing 5 [Source:HGNC Symbol;Acc:HGNC:19117]
67. FHL3 ENSGALG00000035187 476.02 3831.42 four and a half LIM domains 3 [Source:HGNC Symbol;Acc:HGNC:3704]
68. FKBP25 FKBP25 476.02 3831.42
69. FTH FTH 476.02 3831.42
70. GALNTL4 GALNTL4 476.02 3831.42
71. GCAT ENSGALG00000012312 476.02 3831.42 glycine C-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:4188]
72. GDPD4 ENSGALG00000000690 476.02 3831.42 glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
73. GLT8D1 ENSGALG00000001642 476.02 3831.42 glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
74. GPBP1L1 ENSGALG00000010276 476.02 3831.42 GC-rich promoter binding protein 1 like 1 [Source:NCBI gene;Acc:424603]
75. GPI ENSGALG00000004956 476.02 3831.42 glucose-6-phosphate isomerase [Source:NCBI gene;Acc:415783]
76. GSDMA ENSGALG00000013495 476.02 3831.42 gasdermin A [Source:NCBI gene;Acc:426132]
77. HDLBP ENSGALG00000005823 476.02 3831.42 high density lipoprotein binding protein [Source:NCBI gene;Acc:395984]
78. HMGN5 ENSGALG00000007131 476.02 3831.42 high mobility group nucleosome binding domain 5, transcript variant X1
79. HNRNPAB ENSGALG00000014381 476.02 3831.42 heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:396268]
80. HNRNPDL ENSGALG00000023199 476.02 3831.42 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
81. HNRNPU ENSGALG00000010671 476.02 3831.42 heterogeneous nuclear ribonucleoprotein U [Source:HGNC Symbol;Acc:HGNC:5048]
82. HSPA5 ENSGALG00000001000 476.02 3831.42 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:NCBI gene;Acc:396487]
83. HSPA8 ENSGALG00000006512 476.02 3831.42 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
84. HSPE1 ENSGALG00000009070 476.02 3831.42 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
85. LDHB ENSGALG00000035836 476.02 3831.42 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
86. LHFPL2 ENSGALG00000004437 476.02 3831.42 LHFPL tetraspan subfamily member 2 [Source:HGNC Symbol;Acc:HGNC:6588]
87. LOC407092 ENSGALG00000013809 476.02 3831.42 AD012Z, transcript variant X5
88. LOC424109 ENSGALG00000008738 476.02 3831.42 alpha-aspartyl dipeptidase
89. LOC425795 ENSGALG00000027696 476.02 3831.42 ectoderm-neural cortex protein 1-like, transcript variant X1
90. LUZP2 ENSGALG00000030151 476.02 3831.42 leucine zipper protein 2 [Source:NCBI gene;Acc:423001]
91. LYVE1 ENSGALG00000005643 476.02 3831.42 lymphatic vessel endothelial hyaluronan receptor 1 [Source:NCBI gene;Acc:423038]
92. MAPK6 ENSGALG00000031448 476.02 3831.42 mitogen-activated protein kinase 6 [Source:NCBI gene;Acc:415419]
93. MAPT ENSGALG00000000625 476.02 3831.42 microtubule associated protein tau [Source:NCBI gene;Acc:426737]
94. MDK ENSGALG00000008367 476.02 3831.42 midkine [Source:NCBI gene;Acc:423196]
95. MED1 ENSGALG00000001708 476.02 3831.42 mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
96. MIF ENSGALG00000006326 476.02 3831.42 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
97. MOB4 ENSGALG00000008128 476.02 3831.42 MOB family member 4, phocein [Source:NCBI gene;Acc:429007]
98. MRPS15 ENSGALG00000044433 476.02 3831.42 mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:14504]
99. MRPS26 ENSGALG00000014118 476.02 3831.42 mitochondrial ribosomal protein S26 [Source:NCBI gene;Acc:426561]
100. MRPS34 ENSGALG00000001792 476.02 3831.42 mitochondrial ribosomal protein S34 [Source:NCBI gene;Acc:426987]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA