Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s58.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15849.87 118809.35
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5434.24 40734.62 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1696.14 12714.13 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. tpma ENSDARG00000033683 1589.10 11911.77 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. actb2 ENSDARG00000037870 1321.51 9905.93 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. mt-co2 ENSDARG00000063908 1095.08 8208.63 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd2 ENSDARG00000063899 1016.86 7622.30 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. ckmb ENSDARG00000040565 963.34 7221.12 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
9. actb1 ENSDARG00000037746, ENSDARG00000113649 922.17 6912.51 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
10. mt-nd4 ENSDARG00000063917 909.82 6819.94 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. mt-co3 ENSDARG00000063912 848.07 6357.06 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
12. mylz3 ENSDARG00000017441 839.84 6295.37 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
13. ckma ENSDARG00000035327, ENSDARG00000114671 823.37 6171.92 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
14. col1a1a ENSDARG00000012405, ENSDARG00000116113 802.79 6017.65 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
15. mt-atp6 ENSDARG00000063911 699.86 5246.09 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. ppiaa ENSDARG00000009212 679.28 5091.83 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
17. actc1b ENSDARG00000099197 662.81 4968.37 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. hmga1a ENSDARG00000028335 662.81 4968.37 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
19. myhz2 ENSDARG00000012944 633.99 4752.34 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
20. eef1a1l1 ENSDARG00000020850 588.71 4412.92 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. tnnc2 ENSDARG00000070835, ENSDARG00000111155 572.24 4289.46 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
22. acta1a ENSDARG00000036371 555.77 4166.01 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
23. si:dkey-151g10.6 si:dkey-151g10.6 539.31 4042.62
24. ptmab ENSDARG00000101766 522.84 3919.17 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
25. zgc:66286 zgc:66286 518.72 3888.28
26. hspa8 ENSDARG00000068992, ENSDARG00000114726 448.74 3363.72 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
27. atp2a1 ENSDARG00000020574 444.62 3332.84 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
28. mt-nd1 ENSDARG00000063895 399.33 2993.35 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. zgc:112425 zgc:112425 391.10 2931.65
30. cfl1l ENSDARG00000012972 382.87 2869.96 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
31. tpm3 ENSDARG00000005162 382.87 2869.96 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
32. rpl10a ENSDARG00000042905, ENSDARG00000115649 378.75 2839.08 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
33. eef2b ENSDARG00000100371, ENSDARG00000109247 374.63 2808.20 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
34. id1 ENSDARG00000040764 374.63 2808.20 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
35. mt-cyb ENSDARG00000063924 358.17 2684.81 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
36. rpl8 ENSDARG00000014867 358.17 2684.81 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
37. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 354.05 2653.93 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
38. rpsa ENSDARG00000019181 354.05 2653.93 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
39. zgc:92533 zgc:92533 354.05 2653.93
40. rpl9 ENSDARG00000037350, ENSDARG00000112384 345.82 2592.24 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
41. myl10 ENSDARG00000062592 341.70 2561.36 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
42. gch2 ENSDARG00000099101 337.58 2530.47 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
43. pvalb2 ENSDARG00000002768, ENSDARG00000114085 333.46 2499.59 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
44. tnnt3a ENSDARG00000030270 329.35 2468.78 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
45. rpl18a ENSDARG00000025073 325.23 2437.90 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
46. rps12 ENSDARG00000036875, ENSDARG00000115157 317.00 2376.21 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
47. rplp1 ENSDARG00000021864 312.88 2345.32 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
48. rps14 ENSDARG00000036629 308.76 2314.44 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
49. krt8 ENSDARG00000058358, ENSDARG00000109279 304.65 2283.63 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
50. rpl26 ENSDARG00000102317 300.53 2252.75 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
51. rps23 ENSDARG00000021838 300.53 2252.75 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
52. AL954137.2 ENSDARG00000114408 292.30 2191.06
53. btf3 ENSDARG00000035400, ENSDARG00000116462 284.06 2129.29 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
54. rpl19 ENSDARG00000013307 284.06 2129.29 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
55. rpl23 ENSDARG00000053457 284.06 2129.29 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
56. rps27a ENSDARG00000032725, ENSDARG00000114059 284.06 2129.29 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. col1a1b ENSDARG00000035809 279.95 2098.48 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
58. pabpc1a ENSDARG00000017219 275.83 2067.60 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
59. pfn1 ENSDARG00000088091 263.48 1975.02 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
60. icn ENSDARG00000009978 259.36 1944.14 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
61. si:ch1073-429i10.3 259.36 1944.14 si:ch1073-429i10.3, transcript variant X2
62. smyhc1 ENSDARG00000099959, ENSDARG00000115916 259.36 1944.14 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
63. rpl21 ENSDARG00000010516, ENSDARG00000110263 255.24 1913.26 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
64. hbae3 ENSDARG00000079305 251.13 1882.45 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
65. rpl11 ENSDARG00000043509 251.13 1882.45 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
66. rpl27 ENSDARG00000015128 247.01 1851.57 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
67. rpl36a ENSDARG00000058105, ENSDARG00000112656 247.01 1851.57 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
68. rps20 ENSDARG00000036044 247.01 1851.57 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
69. fabp3 ENSDARG00000023290 242.89 1820.68 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
70. rplp0 ENSDARG00000051783 242.89 1820.68 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
71. rps19 ENSDARG00000030602 242.89 1820.68 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
72. rps26l ENSDARG00000030408 238.78 1789.88 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
73. tnni2a.4 ENSDARG00000029069 234.66 1758.99 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
74. hmgn2 ENSDARG00000099572 230.54 1728.11 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
75. fkbp1aa ENSDARG00000022684 226.43 1697.30 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
76. hbbe1.1 ENSDARG00000113599 226.43 1697.30 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
77. rps4x ENSDARG00000014690 226.43 1697.30 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
78. rps6 ENSDARG00000019778 226.43 1697.30 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
79. acta1b ENSDARG00000055618 222.31 1666.42 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
80. and3 ENSDARG00000056873 222.31 1666.42 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
81. cyt1l ENSDARG00000036832 222.31 1666.42 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
82. rps27.1 ENSDARG00000023298 222.31 1666.42 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
83. col1a2 ENSDARG00000020007 218.19 1635.53 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
84. pvalb4 ENSDARG00000024433 209.96 1573.84 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
85. rpl7 ENSDARG00000007320 209.96 1573.84 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
86. myl1 ENSDARG00000014196 205.84 1542.96 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
87. rpl18 ENSDARG00000029533 205.84 1542.96 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
88. ATP5B 201.73 1512.15 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
89. hbbe3 ENSDARG00000038147, ENSDARG00000109344 201.73 1512.15 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
90. rplp2 ENSDARG00000101406 201.73 1512.15 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
91. rps5 ENSDARG00000043453 201.73 1512.15 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
92. rps2 ENSDARG00000077291 197.61 1481.27 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
93. rps15a ENSDARG00000010160 193.49 1450.39 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
94. FP067396.1 FP067396.1 189.38 1419.58
95. aldoab ENSDARG00000034470 185.26 1388.69 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
96. eif5a ENSDARG00000017235 185.26 1388.69 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
97. mt-co1 ENSDARG00000063905 185.26 1388.69 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
98. tnnt3b ENSDARG00000068457 185.26 1388.69 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
99. rpl5b ENSDARG00000015862, ENSDARG00000109661 181.14 1357.81 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
100. rpl6 ENSDARG00000058451 181.14 1357.81 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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