Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s18.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19381.08 145282.60
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3541.40 26546.71 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. hbae3 ENSDARG00000079305 2642.00 19804.71 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
4. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1743.47 13069.23 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
5. tmsb4x ENSDARG00000077777 1345.59 10086.68 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. hbbe1.1 ENSDARG00000113599 1306.07 9790.44 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
7. tpma ENSDARG00000033683 1025.88 7690.10 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. apoc1l apoc1l 1010.07 7571.59
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 967.91 7255.55 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. apoa1b ENSDARG00000101324 936.29 7018.53 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
11. actb2 ENSDARG00000037870 898.52 6735.40 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. hbbe1.1_1 ENSDARG00000113599 804.54 6030.92 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
13. ckma ENSDARG00000035327, ENSDARG00000114671 757.99 5681.97 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
14. apoa2 ENSDARG00000015866 738.67 5537.15 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
15. hbae1_1 695.63 5214.52 hemoglobin, alpha embryonic 1
16. mt-co2 ENSDARG00000063908 687.73 5155.30 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
17. apobb apobb 674.55 5056.50
18. mylz3 ENSDARG00000017441 633.27 4747.06 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
19. mt-co3 ENSDARG00000063912 599.02 4490.32 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. ckmb ENSDARG00000040565 591.99 4437.62 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
21. mt-nd2 ENSDARG00000063899 584.96 4384.92 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. mt-nd4 ENSDARG00000063917 578.82 4338.90 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
23. zgc:112425 zgc:112425 567.40 4253.29
24. eef1a1l1 ENSDARG00000020850 564.76 4233.50 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. hmga1a ENSDARG00000028335 545.44 4088.68 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
26. atp2a1 ENSDARG00000020574 534.02 4003.07 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
27. apoa1a ENSDARG00000012076, ENSDARG00000110395 505.04 3785.83 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
28. ptmab ENSDARG00000101766 470.78 3529.02 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
29. actb1 ENSDARG00000037746, ENSDARG00000113649 463.75 3476.32 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
30. mt-atp6 ENSDARG00000063911 462.00 3463.20 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
31. zgc:161979_1 zgc:161979_1 429.50 3219.58
32. tnnc2 ENSDARG00000070835, ENSDARG00000111155 425.11 3186.67 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
33. actc1b ENSDARG00000099197 419.84 3147.16 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
34. pabpc1a ENSDARG00000017219 409.30 3068.16 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
35. hspa8 ENSDARG00000068992, ENSDARG00000114726 385.58 2890.35 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
36. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 385.58 2890.35 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
37. si:dkey-151g10.6 si:dkey-151g10.6 385.58 2890.35
38. hbae1 383.83 2877.23 hemoglobin, alpha embryonic 1
39. bhmt ENSDARG00000013430 382.95 2870.63 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
40. ppiaa ENSDARG00000009212 362.75 2719.21 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
41. acta1b ENSDARG00000055618 346.94 2600.70 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
42. pvalb1 ENSDARG00000037789 346.94 2600.70 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
43. mt-cyb ENSDARG00000063924 324.98 2436.08 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
44. apoeb ENSDARG00000040295 316.20 2370.27 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
45. mt-nd1 ENSDARG00000063895 314.44 2357.08 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
46. eef2b ENSDARG00000100371, ENSDARG00000109247 296.87 2225.37 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
47. zgc:161979 zgc:161979 286.33 2146.36
48. AL954137.2 ENSDARG00000114408 262.62 1968.63
49. id1 ENSDARG00000040764 254.71 1909.33 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
50. fth1a ENSDARG00000015551 251.20 1883.02 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
51. ttna ttna 249.44 1869.83
52. btf3 ENSDARG00000035400, ENSDARG00000116462 246.81 1850.11 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
53. rplp1 ENSDARG00000021864 246.81 1850.11 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
54. rpl23 ENSDARG00000053457 239.78 1797.42 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
55. rpl8 ENSDARG00000014867 236.27 1771.10 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. zgc:92533 zgc:92533 236.27 1771.10
57. rpl10a ENSDARG00000042905, ENSDARG00000115649 234.51 1757.91 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
58. rpl18a ENSDARG00000025073 232.76 1744.79 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
59. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 227.49 1705.29 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
60. rpl21 ENSDARG00000010516, ENSDARG00000110263 223.09 1672.31 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
61. myhz1.2 ENSDARG00000067995 220.46 1652.59 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
62. hsp90ab1 ENSDARG00000029150 216.95 1626.28 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
63. ctsla ENSDARG00000007836 215.19 1613.09 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
64. tnnt3a ENSDARG00000030270 214.31 1606.49 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
65. si:dkeyp-86f7.3 si:dkeyp-86f7.3 213.43 1599.89
66. rpl36a ENSDARG00000058105, ENSDARG00000112656 208.16 1560.39 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
67. cyt1l ENSDARG00000036832 201.14 1507.77 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
68. rpl11 ENSDARG00000043509 198.50 1487.98 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
69. hmgn2 ENSDARG00000099572 197.62 1481.38 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
70. tnnt3b ENSDARG00000068457 197.62 1481.38 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
71. rps26l ENSDARG00000030408 195.87 1468.26 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
72. rpl26 ENSDARG00000102317 193.23 1448.47 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
73. rps27a ENSDARG00000032725, ENSDARG00000114059 192.35 1441.88 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
74. rpsa ENSDARG00000019181 190.60 1428.76 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
75. apoa4 apoa4 189.72 1422.16
76. rps14 ENSDARG00000036629 186.20 1395.77 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
77. rpl9 ENSDARG00000037350, ENSDARG00000112384 185.33 1389.25 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
78. sepp1a 184.45 1382.66 selenoprotein P, plasma, 1a
79. rps23 ENSDARG00000021838 180.06 1349.75 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
80. mt-co1 ENSDARG00000063905 178.30 1336.56 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
81. si:dkey-150i13.2 ENSDARG00000071052 178.30 1336.56 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
82. slc4a1a ENSDARG00000012881 173.03 1297.05 solute carrier family 4 (anion exchanger), member 1a (Diego blood group) [Source:ZFIN;Acc:ZDB-GENE-010525-1]
83. tnni2a.4 ENSDARG00000029069 173.03 1297.05 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
84. ttnb ttnb 169.52 1270.74
85. AC024175.17 AC024175.17 168.64 1264.14
86. rplp0 ENSDARG00000051783 165.12 1237.76 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
87. si:ch1073-429i10.3 163.37 1224.64 si:ch1073-429i10.3, transcript variant X2
88. si:ch211-226o13.2 162.49 1218.04 si:ch211-226o13.2
89. rps12 ENSDARG00000036875, ENSDARG00000115157 161.61 1211.45 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
90. zgc:153129 zgc:153129 159.85 1198.25
91. hnrnpab hnrnpab 157.22 1178.54
92. col1a1b ENSDARG00000035809 155.46 1165.34 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 154.58 1158.75 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. rplp2 ENSDARG00000101406 153.71 1152.23 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
95. zgc:123194 zgc:123194 153.71 1152.23
96. rps2 ENSDARG00000077291 151.95 1139.03 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
97. cfl1 ENSDARG00000021124 150.19 1125.84 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
98. h3f3a 150.19 1125.84 H3 histone, family 3A, transcript variant X1
99. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 149.31 1119.24 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
100. rps9 ENSDARG00000011405, ENSDARG00000113248 149.31 1119.24 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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