Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s4.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13401.15 100456.03
2. krt4 ENSDARG00000017624, ENSDARG00000115790 6700.58 50228.05 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2233.53 16742.71 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
4. tpma ENSDARG00000033683 2030.48 15220.63 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. actb2 ENSDARG00000037870 1624.38 12176.48 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. mt-atp6 ENSDARG00000063911 1624.38 12176.48 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. mt-co3 ENSDARG00000063912 1624.38 12176.48 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
8. apoa2 ENSDARG00000015866 1421.33 10654.40 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
9. mt-nd2 ENSDARG00000063899 1421.33 10654.40 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. mylz3 ENSDARG00000017441 1421.33 10654.40 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
11. ckma ENSDARG00000035327, ENSDARG00000114671 1218.29 9132.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. mt-nd4 ENSDARG00000063917 1218.29 9132.39 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1218.29 9132.39 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. ndrg2 ENSDARG00000011170 1218.29 9132.39 NDRG family member 2 [Source:ZFIN;Acc:ZDB-GENE-041212-15]
15. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1218.29 9132.39 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
16. acta1b ENSDARG00000055618 1015.24 7610.32 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
17. rpl9 ENSDARG00000037350, ENSDARG00000112384 1015.24 7610.32 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
18. zgc:92533 zgc:92533 1015.24 7610.32
19. BX511252.1 BX511252.1 812.19 6088.24
20. ckmb ENSDARG00000040565 812.19 6088.24 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
21. myhz1.3 ENSDARG00000067997 812.19 6088.24 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
22. tmsb4x ENSDARG00000077777 812.19 6088.24 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
23. tnnt3a ENSDARG00000030270 812.19 6088.24 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. zgc:66286 zgc:66286 812.19 6088.24
25. LRP10 ENSDARG00000054539 609.14 4566.16 low density lipoprotein receptor-related protein 10 [Source:ZFIN;Acc:ZDB-GENE-140418-2]
26. acta1a ENSDARG00000036371 609.14 4566.16 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. apoa1b ENSDARG00000101324 609.14 4566.16 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
28. cdkn1c cdkn1c 609.14 4566.16
29. cyt1l ENSDARG00000036832 609.14 4566.16 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
30. eef1a1l1 ENSDARG00000020850 609.14 4566.16 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
31. etf1 etf1 609.14 4566.16
32. icn ENSDARG00000009978 609.14 4566.16 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
33. mt-co2 ENSDARG00000063908 609.14 4566.16 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
34. mt-cyb ENSDARG00000063924 609.14 4566.16 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. mt-nd1 ENSDARG00000063895 609.14 4566.16 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
36. mybpc3 ENSDARG00000011615 609.14 4566.16 myosin binding protein C, cardiac [Source:ZFIN;Acc:ZDB-GENE-070112-2362]
37. nccrp1 ENSDARG00000035326, ENSDARG00000113175 609.14 4566.16 non-specific cytotoxic cell receptor protein 1 [Source:ZFIN;Acc:ZDB-GENE-000210-13]
38. nme2b.2 ENSDARG00000099420 609.14 4566.16 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
39. pvalb9 ENSDARG00000071601, ENSDARG00000113946 609.14 4566.16 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
40. rpl35a ENSDARG00000088030 609.14 4566.16 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
41. rps23 ENSDARG00000021838 609.14 4566.16 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
42. si:ch211-226o13.2 609.14 4566.16 si:ch211-226o13.2
43. zgc:161979 zgc:161979 609.14 4566.16
44. COL2A1 COL2A1 406.10 3044.16
45. IDH2 ENSDARG00000003795 406.10 3044.16 isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:ZFIN;Acc:ZDB-GENE-031118-95]
46. IGFN1 IGFN1 406.10 3044.16
47. actc1b ENSDARG00000099197 406.10 3044.16 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
48. apoeb ENSDARG00000040295 406.10 3044.16 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
49. bhmt ENSDARG00000013430 406.10 3044.16 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
50. casq2 ENSDARG00000008982 406.10 3044.16 calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
51. ccnd1 ENSDARG00000101637 406.10 3044.16 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
52. cited2 ENSDARG00000030905 406.10 3044.16 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 [Source:ZFIN;Acc:ZDB-GENE-041010-141]
53. col1a1b ENSDARG00000035809 406.10 3044.16 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
54. cul1a ENSDARG00000019239, ENSDARG00000113068, ENSDARG00000114068 406.10 3044.16 cullin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2603]
55. dap ENSDARG00000000069, ENSDARG00000114419 406.10 3044.16 death-associated protein [Source:ZFIN;Acc:ZDB-GENE-000511-3]
56. eef2b ENSDARG00000100371, ENSDARG00000109247 406.10 3044.16 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
57. fam3c ENSDARG00000056152 406.10 3044.16 family with sequence similarity 3, member C [Source:ZFIN;Acc:ZDB-GENE-030131-6137]
58. flna ENSDARG00000074201 406.10 3044.16 filamin A, alpha (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-030131-2145]
59. gamt ENSDARG00000070844, ENSDARG00000109945 406.10 3044.16 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
60. gapdh ENSDARG00000043457 406.10 3044.16 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
61. gapdhs ENSDARG00000039914 406.10 3044.16 glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:ZFIN;Acc:ZDB-GENE-020913-1]
62. gnb2l1 406.10 3044.16 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
63. gopc ENSDARG00000023117 406.10 3044.16 golgi-associated PDZ and coiled-coil motif containing [Source:ZFIN;Acc:ZDB-GENE-030131-5086]
64. hrsp12 406.10 3044.16 heat-responsive protein 12, transcript variant 1
65. hsp90ab1 ENSDARG00000029150 406.10 3044.16 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
66. hspa8 ENSDARG00000068992, ENSDARG00000114726 406.10 3044.16 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
67. krt5 ENSDARG00000058371, ENSDARG00000112017 406.10 3044.16 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
68. larp1b ENSDARG00000061169 406.10 3044.16 La ribonucleoprotein domain family, member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4154]
69. ldha ENSDARG00000101251 406.10 3044.16 lactate dehydrogenase A4 [Source:ZFIN;Acc:ZDB-GENE-991026-5]
70. myhz1.2 ENSDARG00000067995 406.10 3044.16 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
71. nudcd2 ENSDARG00000078059, ENSDARG00000109490 406.10 3044.16 NudC domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040801-49]
72. pabpc1a ENSDARG00000017219 406.10 3044.16 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
73. pacsin3 ENSDARG00000099339 406.10 3044.16 protein kinase C and casein kinase substrate in neurons 3 [Source:ZFIN;Acc:ZDB-GENE-040426-984]
74. ptmab ENSDARG00000101766 406.10 3044.16 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
75. pvalb1 ENSDARG00000037789 406.10 3044.16 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
76. rpl10a ENSDARG00000042905, ENSDARG00000115649 406.10 3044.16 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
77. rpl11 ENSDARG00000043509 406.10 3044.16 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
78. rpl18a ENSDARG00000025073 406.10 3044.16 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
79. rpl21 ENSDARG00000010516, ENSDARG00000110263 406.10 3044.16 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
80. rpl23 ENSDARG00000053457 406.10 3044.16 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
81. rpl39 ENSDARG00000036316, ENSDARG00000117167 406.10 3044.16 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
82. rpl7 ENSDARG00000007320 406.10 3044.16 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
83. rpl8 ENSDARG00000014867 406.10 3044.16 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
84. rplp0 ENSDARG00000051783 406.10 3044.16 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
85. rplp2l ENSDARG00000011201 406.10 3044.16 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
86. rps14 ENSDARG00000036629 406.10 3044.16 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
87. rps19 ENSDARG00000030602 406.10 3044.16 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
88. rpsa ENSDARG00000019181 406.10 3044.16 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
89. rtn1a ENSDARG00000006497 406.10 3044.16 reticulon 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2426]
90. si:dkey-33i11.4 ENSDARG00000099117 406.10 3044.16 si:dkey-33i11.4 [Source:ZFIN;Acc:ZDB-GENE-030131-33]
91. si:dkeyp-113d7.4 si:dkeyp-113d7.4 406.10 3044.16
92. slc1a5 ENSDARG00000099186 406.10 3044.16 solute carrier family 1 (neutral amino acid transporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-070501-4]
93. slc3a2a ENSDARG00000036427, ENSDARG00000112231 406.10 3044.16 solute carrier family 3 (amino acid transporter heavy chain), member 2a [Source:ZFIN;Acc:ZDB-GENE-000831-3]
94. sparc ENSDARG00000019353 406.10 3044.16 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
95. tnni2a.4 ENSDARG00000029069 406.10 3044.16 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
96. tnnt3b ENSDARG00000068457 406.10 3044.16 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
97. tpd52l2a ENSDARG00000027154 406.10 3044.16 tumor protein D52-like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7047]
98. tpm2 ENSDARG00000104682 406.10 3044.16 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
99. uba52 ENSDARG00000041435 406.10 3044.16 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
100. vps13a ENSDARG00000039225 406.10 3044.16 vacuolar protein sorting 13 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030926-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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