Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s21.

Sample reads: 133,386. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24920.39 186837.03
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3647.28 27344.96 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 1870.26 14022.00 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. tmsb4x ENSDARG00000077777 1848.19 13856.54 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. mt-co2 ENSDARG00000063908 1286.69 9646.77 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. apoc1l apoc1l 1204.14 9027.87
7. zgc:161979 zgc:161979 1182.08 8862.47
8. tpma ENSDARG00000033683 1175.67 8814.42 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
9. apoa2 ENSDARG00000015866 1119.45 8392.91 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
10. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1110.91 8328.89 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
11. mt-nd2 ENSDARG00000063899 1058.96 7939.40 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. zgc:161979_1 zgc:161979_1 1054.69 7907.39
13. mt-atp6 ENSDARG00000063911 976.40 7320.42 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. apobb apobb 957.19 7176.39
15. mt-nd4 ENSDARG00000063917 922.32 6914.96 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. hbae3 ENSDARG00000079305 888.16 6658.85 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
17. ckmb ENSDARG00000040565 765.04 5735.78 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
18. apoa1a ENSDARG00000012076, ENSDARG00000110395 740.84 5554.34 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
19. si:dkey-151g10.6 si:dkey-151g10.6 697.43 5228.88
20. actb2 ENSDARG00000037870 689.60 5170.18 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. mt-co3 ENSDARG00000063912 622.00 4663.36 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. hbbe1.1 ENSDARG00000113599 604.92 4535.30 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
23. apoeb ENSDARG00000040295 593.53 4449.91 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
24. eef1a1l1 ENSDARG00000020850 545.14 4087.11 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. he1a 538.02 4033.73 hatching enzyme 1a, transcript variant X1
26. bhmt ENSDARG00000013430 529.48 3969.70 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
27. zgc:112425 zgc:112425 528.06 3959.05
28. ctslb ENSDARG00000039173, ENSDARG00000074306 488.91 3665.53 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
29. atp2a1 ENSDARG00000020574 475.39 3564.17 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
30. wu:fa26c03 446.21 3345.40 wu:fa26c03
31. pvalb2 ENSDARG00000002768, ENSDARG00000114085 444.79 3334.75 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
32. mt-nd1 ENSDARG00000063895 443.37 3324.10 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. zgc:174855 ENSDARG00000094559 424.86 3185.33 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
34. mt-cyb ENSDARG00000063924 422.02 3164.03 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. mylz3 ENSDARG00000017441 406.36 3046.63 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
36. eef2b ENSDARG00000100371, ENSDARG00000109247 398.53 2987.92 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
37. hbae1_1 394.97 2961.23 hemoglobin, alpha embryonic 1
38. ckma ENSDARG00000035327, ENSDARG00000114671 372.91 2795.84 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
39. apoa4 apoa4 372.20 2790.52
40. actc1b ENSDARG00000099197 367.93 2758.50 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
41. AL935210.1 ENSDARG00000088330 359.39 2694.47 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
42. hmga1a ENSDARG00000028335 359.39 2694.47 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
43. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 348.00 2609.08 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
44. CABZ01044814.2 CABZ01044814.2 334.48 2507.72
45. actb1 ENSDARG00000037746, ENSDARG00000113649 330.92 2481.02 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
46. ppiaa ENSDARG00000009212 306.02 2294.34 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
47. hspa8 ENSDARG00000068992, ENSDARG00000114726 301.03 2256.93 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
48. si:dkey-150i13.2 ENSDARG00000071052 298.90 2240.96 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
49. wu:fb37b09 wu:fb37b09 294.63 2208.95
50. rpl18a ENSDARG00000025073 293.21 2198.30 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
51. rpl10a ENSDARG00000042905, ENSDARG00000115649 289.65 2171.61 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
52. rpl23 ENSDARG00000053457 288.22 2160.89 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
53. fabp2 ENSDARG00000006427, ENSDARG00000110230 278.97 2091.54 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
54. zgc:153129 zgc:153129 276.84 2075.57
55. rps26l ENSDARG00000030408 271.14 2032.83 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. tnnc2 ENSDARG00000070835, ENSDARG00000111155 258.33 1936.79 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
57. hbbe1.1_1 ENSDARG00000113599 251.93 1888.81 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
58. si:dkey-269i1.3 250.51 1878.16 si:dkey-269i1.3
59. zgc:174153 ENSDARG00000079376 246.24 1846.15 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
60. he1b 244.10 1830.10 hatching enzyme 1b
61. rpl8 ENSDARG00000014867 236.27 1771.40 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
62. zgc:92533 zgc:92533 236.27 1771.40
63. rpl36 ENSDARG00000100588 235.56 1766.08 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
64. pabpc1a ENSDARG00000017219 232.00 1739.39 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
65. si:dkey-239j18.3 ENSDARG00000089806 229.87 1723.42 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
66. tfa ENSDARG00000016771 229.87 1723.42 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
67. lama2 ENSDARG00000099390 227.73 1707.37 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
68. rps23 ENSDARG00000021838 227.73 1707.37 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
69. ttnb ttnb 225.60 1691.40
70. btf3 ENSDARG00000035400, ENSDARG00000116462 214.92 1611.33 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
71. ttna ttna 214.92 1611.33
72. rps14 ENSDARG00000036629 214.21 1606.01 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
73. eif5a ENSDARG00000017235 211.36 1584.64 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
74. psap ENSDARG00000013968 207.81 1558.03 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
75. rpl21 ENSDARG00000010516, ENSDARG00000110263 205.67 1541.98 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
76. gatm ENSDARG00000036239 201.40 1509.97 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
77. rpl36a ENSDARG00000058105, ENSDARG00000112656 199.27 1494.00 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
78. cyt1l ENSDARG00000036832 197.84 1483.28 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
79. rpl26 ENSDARG00000102317 196.42 1472.63 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
80. fetub ENSDARG00000053973 193.57 1451.26 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
81. rps27a ENSDARG00000032725, ENSDARG00000114059 188.59 1413.93 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
82. rpl9 ENSDARG00000037350, ENSDARG00000112384 185.03 1387.24 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
83. rps20 ENSDARG00000036044 183.61 1376.59 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
84. rpl11 ENSDARG00000043509 180.76 1355.22 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
85. AL954137.2 ENSDARG00000114408 179.34 1344.58
86. pvalb9 ENSDARG00000071601, ENSDARG00000113946 179.34 1344.58 parvalbumin 9 [Source:ZFIN;Acc:ZDB-GENE-030805-4]
87. rps15 ENSDARG00000070849, ENSDARG00000110979 178.63 1339.25 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
88. AC024175.17 AC024175.17 177.20 1328.53
89. sepp1a 177.20 1328.53 selenoprotein P, plasma, 1a
90. APOB APOB 173.65 1301.92
91. si:dkey-26g8.5 ENSDARG00000089750 172.22 1291.19 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
92. rps2 ENSDARG00000077291 165.82 1243.21 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
93. si:dkeyp-86f7.3 si:dkeyp-86f7.3 165.82 1243.21
94. mt-co1 ENSDARG00000063905 164.39 1232.49 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
95. gamt ENSDARG00000070844, ENSDARG00000109945 162.97 1221.84 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
96. col1a1b ENSDARG00000035809 160.12 1200.48 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
97. rpl19 ENSDARG00000013307 159.41 1195.15 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
98. myhz1.3 ENSDARG00000067997 158.70 1189.83 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
99. pcna ENSDARG00000054155 156.57 1173.86 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
100. rpl27 ENSDARG00000015128 155.85 1168.46 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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