Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s20.

Sample reads: 133,422. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25044.63 187714.40
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2847.66 21343.77 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 1754.35 13149.20 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. tmsb4x ENSDARG00000077777 1233.45 9244.95 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. apoa2 ENSDARG00000015866 1203.05 9017.10 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
6. apoc1l apoc1l 1142.77 8565.28
7. zgc:161979 zgc:161979 1112.37 8337.43
8. mt-nd2 ENSDARG00000063899 1065.49 7986.06 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. apobb apobb 1011.90 7584.39
10. mt-co2 ENSDARG00000063908 921.74 6908.62 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. zgc:161979_1 zgc:161979_1 882.58 6615.11
12. mt-atp6 ENSDARG00000063911 804.27 6028.16 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. tpma ENSDARG00000033683 792.42 5939.34 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
14. zgc:112425 zgc:112425 767.69 5753.99
15. apoa1a ENSDARG00000012076, ENSDARG00000110395 668.76 5012.49 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
16. actb2 ENSDARG00000037870 662.07 4962.34 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
17. si:dkey-151g10.6 si:dkey-151g10.6 648.67 4861.91
18. mt-nd4 ENSDARG00000063917 623.94 4676.55 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
19. he1a 620.85 4653.39 hatching enzyme 1a, transcript variant X1
20. hbbe3 ENSDARG00000038147, ENSDARG00000109344 602.81 4518.18 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
21. apoeb ENSDARG00000040295 592.51 4440.98 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
22. hbae3 ENSDARG00000079305 539.96 4047.11 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
23. eef1a1l1 ENSDARG00000020850 535.32 4012.33 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. mt-co3 ENSDARG00000063912 487.40 3653.16 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
25. ckmb ENSDARG00000040565 482.25 3614.56 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
26. ctslb ENSDARG00000039173, ENSDARG00000074306 473.49 3548.90 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
27. hmga1a ENSDARG00000028335 470.40 3525.74 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
28. mt-nd1 ENSDARG00000063895 449.79 3371.26 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. zgc:174855 ENSDARG00000094559 441.55 3309.50 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
30. mt-cyb ENSDARG00000063924 433.82 3251.57 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. ppiaa ENSDARG00000009212 427.12 3201.35 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
32. wu:fa26c03 424.55 3182.09 wu:fa26c03
33. si:dkey-150i13.2 ENSDARG00000071052 406.00 3043.05 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
34. bhmt ENSDARG00000013430 371.48 2784.32 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
35. hbbe1.1 ENSDARG00000113599 357.57 2680.06 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
36. CABZ01044814.2 CABZ01044814.2 357.05 2676.16
37. rpl10a ENSDARG00000042905, ENSDARG00000115649 335.93 2517.86 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
38. hspa8 ENSDARG00000068992, ENSDARG00000114726 334.90 2510.14 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
39. apoa4 apoa4 327.68 2456.03
40. actb1 ENSDARG00000037746, ENSDARG00000113649 323.56 2425.15 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
41. ptmab ENSDARG00000101766 322.53 2417.43 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
42. eef2b ENSDARG00000100371, ENSDARG00000109247 320.47 2401.99 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
43. rpl23 ENSDARG00000053457 315.32 2363.39 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
44. fabp2 ENSDARG00000006427, ENSDARG00000110230 299.86 2247.51 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
45. rpl21 ENSDARG00000010516, ENSDARG00000110263 292.13 2189.57 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
46. rpl18a ENSDARG00000025073 279.77 2096.93 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
47. ckma ENSDARG00000035327, ENSDARG00000114671 279.25 2093.03 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
48. rpl8 ENSDARG00000014867 275.65 2066.05 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
49. he1b 274.62 2058.33 hatching enzyme 1b
50. btf3 ENSDARG00000035400, ENSDARG00000116462 273.59 2050.61 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
51. atp2a1 ENSDARG00000020574 272.04 2038.99 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
52. pcna ENSDARG00000054155 270.49 2027.38 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
53. wu:fb37b09 wu:fb37b09 261.73 1961.72
54. rps23 ENSDARG00000021838 261.22 1957.89 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
55. mylz3 ENSDARG00000017441 255.55 1915.40 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
56. si:dkey-269i1.3 255.04 1911.57 si:dkey-269i1.3
57. zgc:153129 zgc:153129 255.04 1911.57
58. AC024175.17 AC024175.17 251.95 1888.41
59. mt-co1 ENSDARG00000063905 251.43 1884.52 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
60. si:dkey-239j18.3 ENSDARG00000089806 248.85 1865.18 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
61. rpl26 ENSDARG00000102317 247.82 1857.46 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
62. pvalb2 ENSDARG00000002768, ENSDARG00000114085 247.31 1853.64 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
63. rps14 ENSDARG00000036629 246.79 1849.74 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
64. AL954137.2 ENSDARG00000114408 246.28 1845.92
65. rpl11 ENSDARG00000043509 244.22 1830.48 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
66. rps2 ENSDARG00000077291 241.64 1811.14 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
67. rps27a ENSDARG00000032725, ENSDARG00000114059 238.55 1787.98 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
68. si:dkeyp-86f7.3 si:dkeyp-86f7.3 230.82 1730.04
69. ttna ttna 227.21 1702.98
70. rpl9 ENSDARG00000037350, ENSDARG00000112384 223.09 1672.10 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
71. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 221.03 1656.66 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
72. zgc:174153 ENSDARG00000079376 220.52 1652.84 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
73. rps26l ENSDARG00000030408 218.97 1641.22 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
74. rpl36a ENSDARG00000058105, ENSDARG00000112656 212.79 1594.90 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
75. actc1b ENSDARG00000099197 211.24 1583.29 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
76. tfa ENSDARG00000016771 206.09 1544.68 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
77. ttnb ttnb 206.09 1544.68
78. hsp90ab1 ENSDARG00000029150 197.33 1479.03 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
79. rplp1 ENSDARG00000021864 195.79 1467.48 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
80. rps15 ENSDARG00000070849, ENSDARG00000110979 195.79 1467.48 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
81. rps6 ENSDARG00000019778 194.24 1455.87 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
82. rps15a ENSDARG00000010160 191.15 1432.71 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
83. rpl19 ENSDARG00000013307 188.06 1409.55 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
84. si:dkey-26g8.5 ENSDARG00000089750 187.54 1405.65 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
85. rps4x ENSDARG00000014690 184.45 1382.49 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
86. tnnc2 ENSDARG00000070835, ENSDARG00000111155 182.91 1370.95 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
87. rpl36 ENSDARG00000100588 181.36 1359.33 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
88. zgc:92533 zgc:92533 180.33 1351.61
89. rpl27 ENSDARG00000015128 171.57 1285.95 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
90. pabpc1a ENSDARG00000017219 170.54 1278.23 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
91. hbbe1.1_1 ENSDARG00000113599 168.99 1266.61 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
92. rpl6 ENSDARG00000058451 168.48 1262.79 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
93. cfl1 ENSDARG00000021124 166.93 1251.17 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
94. rpl35 ENSDARG00000018334 166.93 1251.17 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
95. gatm ENSDARG00000036239 166.42 1247.35 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
96. psap ENSDARG00000013968 166.42 1247.35 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
97. cyt1l ENSDARG00000036832 165.90 1243.45 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
98. id1 ENSDARG00000040764 164.36 1231.91 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
99. hbae1_1 163.84 1228.01 hemoglobin, alpha embryonic 1
100. rps9 ENSDARG00000011405, ENSDARG00000113248 158.69 1189.41 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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