Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s27.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13135.00 98461.28
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3283.75 24615.32 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd1 ENSDARG00000063895 2052.34 15384.55 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
4. atp2a1 ENSDARG00000020574 1641.88 12307.70 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
5. mt-atp6 ENSDARG00000063911 1641.88 12307.70 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
6. mt-co2 ENSDARG00000063908 1641.88 12307.70 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd4 ENSDARG00000063917 1641.88 12307.70 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. tmsb4x ENSDARG00000077777 1641.88 12307.70 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. ckma ENSDARG00000035327, ENSDARG00000114671 1231.41 9230.77 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
10. eif4a3 ENSDARG00000102978 1231.41 9230.77 eukaryotic translation initiation factor 4A3 [Source:ZFIN;Acc:ZDB-GENE-040426-915]
11. mt-co3 ENSDARG00000063912 1231.41 9230.77 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
12. si:dkey-151g10.6 si:dkey-151g10.6 1231.41 9230.77
13. tpma ENSDARG00000033683 1231.41 9230.77 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
14. zgc:112425 zgc:112425 1231.41 9230.77
15. zgc:161979 zgc:161979 1231.41 9230.77
16. CABZ01081490.1 ENSDARG00000111653 820.94 6153.85
17. RPS17L RPS17L 820.94 6153.85
18. actb2 ENSDARG00000037870 820.94 6153.85 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. actc1b ENSDARG00000099197 820.94 6153.85 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
20. apoa1b ENSDARG00000101324 820.94 6153.85 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
21. btf3 ENSDARG00000035400, ENSDARG00000116462 820.94 6153.85 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
22. cct6a ENSDARG00000021252 820.94 6153.85 chaperonin containing TCP1, subunit 6A (zeta 1) [Source:ZFIN;Acc:ZDB-GENE-011018-2]
23. cfl1 ENSDARG00000021124 820.94 6153.85 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
24. ckmb ENSDARG00000040565 820.94 6153.85 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
25. dpp4 ENSDARG00000079420 820.94 6153.85 dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
26. eef2b ENSDARG00000100371, ENSDARG00000109247 820.94 6153.85 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
27. fkbp1aa ENSDARG00000022684 820.94 6153.85 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
28. myl10 ENSDARG00000062592 820.94 6153.85 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
29. nexn ENSDARG00000057317 820.94 6153.85 nexilin (F actin binding protein) [Source:ZFIN;Acc:ZDB-GENE-041114-92]
30. nit2 ENSDARG00000017590 820.94 6153.85 nitrilase family, member 2 [Source:ZFIN;Acc:ZDB-GENE-050522-65]
31. nme2b.2 ENSDARG00000099420 820.94 6153.85 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
32. npm1a ENSDARG00000014329, ENSDARG00000113199 820.94 6153.85 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 820.94 6153.85 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. rpl11 ENSDARG00000043509 820.94 6153.85 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
35. rpl18a ENSDARG00000025073 820.94 6153.85 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
36. rpl23 ENSDARG00000053457 820.94 6153.85 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
37. rpl24 ENSDARG00000099104 820.94 6153.85 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
38. rpl31 ENSDARG00000053365 820.94 6153.85 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
39. rplp0 ENSDARG00000051783 820.94 6153.85 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
40. rps13 ENSDARG00000036298, ENSDARG00000112818 820.94 6153.85 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
41. rps27.1 ENSDARG00000023298 820.94 6153.85 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
42. tnnc2 ENSDARG00000070835, ENSDARG00000111155 820.94 6153.85 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
43. tnnt3a ENSDARG00000030270 820.94 6153.85 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
44. ttna ttna 820.94 6153.85
45. ARID3C ENSDARG00000067729, ENSDARG00000114447 410.47 3076.92 AT rich interactive domain 3C (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-060526-12]
46. BX511252.1 BX511252.1 410.47 3076.92
47. CABZ01028296.1 CABZ01028296.1 410.47 3076.92
48. CABZ01074435.1 CABZ01074435.1 410.47 3076.92
49. CHCHD3 CHCHD3 410.47 3076.92
50. FAM3D ENSDARG00000091625 410.47 3076.92 family with sequence similarity 3 member D [Source:HGNC Symbol;Acc:HGNC:18665]
51. FP067396.1 FP067396.1 410.47 3076.92
52. HNRNPAB HNRNPAB 410.47 3076.92
53. MAP3K15 ENSDARG00000013310, ENSDARG00000110884 410.47 3076.92 mitogen-activated protein kinase kinase kinase 15 [Source:ZFIN;Acc:ZDB-GENE-091204-246]
54. MED17 ENSDARG00000006345 410.47 3076.92 mediator complex subunit 17 [Source:ZFIN;Acc:ZDB-GENE-040302-1]
55. MRPL42 ENSDARG00000079391 410.47 3076.92 mitochondrial ribosomal protein L42 [Source:ZFIN;Acc:ZDB-GENE-101014-1]
56. NUAK1_1 NUAK1_1 410.47 3076.92
57. PHLPP1 ENSDARG00000078694 410.47 3076.92 PH domain and leucine rich repeat protein phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-131127-271]
58. RABGAP1 ENSDARG00000098967 410.47 3076.92 RAB GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-170622-1]
59. RPL37A RPL37A 410.47 3076.92
60. SERP1 ENSDARG00000076223 410.47 3076.92 stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]
61. STMN3 ENSDARG00000038465 410.47 3076.92 stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
62. TMEM200B TMEM200B 410.47 3076.92
63. TMPPE ENSDARG00000036059, ENSDARG00000114955 410.47 3076.92 transmembrane protein with metallophosphoesterase domain [Source:ZFIN;Acc:ZDB-GENE-061013-104]
64. aars ENSDARG00000069142, ENSDARG00000113882 410.47 3076.92 alanyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-3663]
65. abracl ENSDARG00000042876 410.47 3076.92 ABRA C-terminal like [Source:ZFIN;Acc:ZDB-GENE-030131-8594]
66. acsf2 ENSDARG00000061201 410.47 3076.92 acyl-CoA synthetase family member 2 [Source:ZFIN;Acc:ZDB-GENE-060825-7]
67. acta1a ENSDARG00000036371 410.47 3076.92 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
68. actc1a ENSDARG00000042535, ENSDARG00000076126, ENSDARG00000116925 410.47 3076.92 actin, alpha, cardiac muscle 1a [Source:ZFIN;Acc:ZDB-GENE-040520-4]
69. acvr2ab ENSDARG00000104700 410.47 3076.92 activin A receptor type 2Ab [Source:ZFIN;Acc:ZDB-GENE-120215-23]
70. anxa1c ENSDARG00000104359 410.47 3076.92 annexin A1c [Source:ZFIN;Acc:ZDB-GENE-030131-5274]
71. ap1s2 ENSDARG00000058504, ENSDARG00000114515 410.47 3076.92 adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
72. apoa4 apoa4 410.47 3076.92
73. apoeb ENSDARG00000040295 410.47 3076.92 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
74. arpc4 ENSDARG00000054063 410.47 3076.92 actin related protein 2/3 complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-010724-9]
75. atp1b3b ENSDARG00000042837 410.47 3076.92 ATPase Na+/K+ transporting subunit beta 3b [Source:ZFIN;Acc:ZDB-GENE-001127-1]
76. atp5c1 410.47 3076.92 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant 3
77. atp6v0ca ENSDARG00000057853 410.47 3076.92 ATPase H+ transporting V0 subunit ca [Source:ZFIN;Acc:ZDB-GENE-020419-23]
78. atp6v1f ENSDARG00000045543 410.47 3076.92 ATPase H+ transporting V1 subunit F [Source:ZFIN;Acc:ZDB-GENE-040718-259]
79. bhmt ENSDARG00000013430 410.47 3076.92 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
80. capza1a ENSDARG00000034240 410.47 3076.92 capping actin protein of muscle Z-line subunit alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5237]
81. cct2 ENSDARG00000087206, ENSDARG00000104674 410.47 3076.92 chaperonin containing TCP1, subunit 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-020419-6]
82. cd9b ENSDARG00000016691 410.47 3076.92 CD9 molecule b [Source:ZFIN;Acc:ZDB-GENE-040426-2768]
83. cdh2 ENSDARG00000018693, ENSDARG00000117201 410.47 3076.92 cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
84. chtf8 ENSDARG00000069045, ENSDARG00000115254 410.47 3076.92 CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050419-148]
85. cirbp cirbp 410.47 3076.92
86. cmn ENSDARG00000055527 410.47 3076.92 calymmin [Source:ZFIN;Acc:ZDB-GENE-000208-9]
87. cnbpb ENSDARG00000070922 410.47 3076.92 CCHC-type zinc finger, nucleic acid binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-7782]
88. cnot6 cnot6 410.47 3076.92
89. col11a1a ENSDARG00000026165, ENSDARG00000115341 410.47 3076.92 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
90. col9a2 ENSDARG00000024492 410.47 3076.92 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
91. coq10b ENSDARG00000056141 410.47 3076.92 coenzyme Q10B [Source:ZFIN;Acc:ZDB-GENE-050417-263]
92. cox4i1 ENSDARG00000032970 410.47 3076.92 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
93. cox7c ENSDARG00000104537 410.47 3076.92 cytochrome c oxidase subunit 7C [Source:ZFIN;Acc:ZDB-GENE-030131-8062]
94. cox8a ENSDARG00000095273 410.47 3076.92 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
95. cpda ENSDARG00000055648, ENSDARG00000110375, ENSDARG00000115395 410.47 3076.92 carboxypeptidase D, a [Source:ZFIN;Acc:ZDB-GENE-081112-2]
96. cpe ENSDARG00000055874, ENSDARG00000116033 410.47 3076.92 carboxypeptidase E [Source:ZFIN;Acc:ZDB-GENE-090313-68]
97. creg1 ENSDARG00000105154 410.47 3076.92 cellular repressor of E1A-stimulated genes 1 [Source:ZFIN;Acc:ZDB-GENE-070112-2042]
98. ctsba ENSDARG00000055120 410.47 3076.92 cathepsin Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2650]
99. cyt1l ENSDARG00000036832 410.47 3076.92 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
100. dact1 ENSDARG00000101635 410.47 3076.92 dishevelled-binding antagonist of beta-catenin 1 [Source:ZFIN;Acc:ZDB-GENE-040623-3]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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