Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s49.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4580.31 47585.42 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 4139.58 43006.62 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Co2 ENSMUSG00000064354 2422.34 25166.00 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Atp6 ENSMUSG00000064357 2370.27 24625.04 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd1 ENSMUSG00000064341 2355.15 24467.95 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 2322.57 24129.47 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1346.38 13987.71 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 990.64 10291.88 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Rnr2 ENSMUSG00000064339 880.79 9150.64 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. H19 ENSMUSG00000000031 855.26 8885.40 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Nd2 ENSMUSG00000064345 822.68 8546.93 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Co3 ENSMUSG00000064358 814.95 8466.62 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Actb ENSMUSG00000029580 810.25 8417.79 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Mdk ENSMUSG00000027239 778.67 8089.70 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Eef1a1 ENSMUSG00000037742 607.35 6309.84 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. mt-Nd5 ENSMUSG00000064367 550.91 5723.47 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. Hbb-y ENSMUSG00000052187 540.16 5611.79 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Igf2 ENSMUSG00000048583 434.68 4515.95 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Gm13340 ENSMUSG00000083563 370.19 3845.95 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Gm10800 ENSMUSG00000075014 362.46 3765.64 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. Hba-x ENSMUSG00000055609 339.28 3524.82 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
22. Hmga2 ENSMUSG00000056758 317.78 3301.46 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Rpsa ENSMUSG00000032518 300.32 3120.06 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Hba-a1 ENSMUSG00000069919 285.87 2969.94 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Tubb5 ENSMUSG00000001525 262.02 2722.16 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Cfl1 ENSMUSG00000056201 257.65 2676.76 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Npm1 ENSMUSG00000057113 250.93 2606.94 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Tuba1b ENSMUSG00000023004 248.58 2582.53 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Pkm ENSMUSG00000032294 241.19 2505.75 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Ubb ENSMUSG00000019505 215.66 2240.52 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Nedd4 ENSMUSG00000032216 212.98 2212.68 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Tpt1 ENSMUSG00000060126 194.16 2017.15 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Rpl4 ENSMUSG00000032399 183.08 1902.04 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Rps20 ENSMUSG00000028234 180.39 1874.09 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
35. Hsp90ab1 ENSMUSG00000023944 173.34 1800.85 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Rpl23 ENSMUSG00000071415 156.88 1629.85 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
37. Rps26 ENSMUSG00000025362 152.84 1587.87 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
38. Eif5a ENSMUSG00000078812 152.51 1584.45 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
39. Eif4g2 ENSMUSG00000005610 147.47 1532.08 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
40. Chchd2 ENSMUSG00000070493 147.13 1528.55 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Eef1b2 ENSMUSG00000025967 143.10 1486.68 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Rpl18a ENSMUSG00000045128 141.76 1472.76 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
43. Myl6 ENSMUSG00000090841 130.67 1357.55 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
44. Pbx1 ENSMUSG00000052534 127.65 1326.17 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
45. Banf1 ENSMUSG00000024844 126.98 1319.21 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
46. Fkbp1a ENSMUSG00000032966 126.98 1319.21 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
47. Hbb-bh1 ENSMUSG00000052217 124.96 1298.23 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
48. Gpc3 ENSMUSG00000055653 122.95 1277.34 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
49. Hba-a2 ENSMUSG00000069917 119.92 1245.86 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
50. Ywhab ENSMUSG00000018326 118.24 1228.41 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. Grb10 ENSMUSG00000020176 116.57 1211.06 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
52. Hmgn1 ENSMUSG00000040681 115.56 1200.57 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
53. Lbh ENSMUSG00000024063 113.88 1183.11 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
54. Hnrnpc ENSMUSG00000060373 111.86 1162.13 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Paics ENSMUSG00000029247 111.53 1158.70 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
56. Rplp1 ENSMUSG00000007892 109.85 1141.25 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
57. Peg3 ENSMUSG00000002265 108.84 1130.75 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
58. Col3a1 ENSMUSG00000026043 108.50 1127.22 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
59. Ngfrap1 107.16 1113.30 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
60. Pcbp1 ENSMUSG00000051695 107.16 1113.30 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
61. Atp5g3 ENSMUSG00000018770 106.49 1106.34 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
62. Rps3a1 ENSMUSG00000028081 106.49 1106.34 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
63. Hsp90aa1 ENSMUSG00000021270 103.80 1078.39 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
64. Rpl32 ENSMUSG00000057841 103.80 1078.39 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
65. Gm5805 ENSMUSG00000061848 102.46 1064.47 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
66. Trim28 ENSMUSG00000005566 100.78 1047.02 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
67. Ago2 ENSMUSG00000036698 100.44 1043.48 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
68. Rps4x ENSMUSG00000031320 99.77 1036.52 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Gm14303 ENSMUSG00000081344 99.10 1029.56 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
70. Ran ENSMUSG00000029430 97.08 1008.58 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
71. Cdk4 ENSMUSG00000006728 96.41 1001.62 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
72. mt-Rnr1 ENSMUSG00000064337 96.41 1001.62 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
73. Pabpc1 ENSMUSG00000022283 96.07 998.08 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
74. Rpl39-ps ENSMUSG00000036305 96.07 998.08 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
75. Ybx1 ENSMUSG00000028639 95.74 994.66 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
76. U2af2 ENSMUSG00000030435 95.40 991.12 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
77. Sfrp1 ENSMUSG00000031548 95.07 987.69 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
78. Col1a1 ENSMUSG00000001506 94.39 980.63 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
79. Gm14586 ENSMUSG00000083621 94.06 977.20 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
80. Rps5 ENSMUSG00000012848 93.72 973.67 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
81. Rrm2 ENSMUSG00000020649 93.72 973.67 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
82. Meg3 ENSMUSG00000021268 93.05 966.71 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
83. Tmsb10 ENSMUSG00000079523 92.04 956.22 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
84. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 91.71 952.79 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
85. Eef2 ENSMUSG00000034994 89.69 931.80 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
86. H3f3b ENSMUSG00000016559 88.01 914.35 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
87. Marcksl1 ENSMUSG00000047945 88.01 914.35 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
88. Cdkn1c ENSMUSG00000037664 87.68 910.92 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
89. Set ENSMUSG00000054766 87.68 910.92 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
90. Rpl8 ENSMUSG00000003970 87.00 903.85 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Hnrnpa2b1 ENSMUSG00000004980 85.66 889.93 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
92. Tecr ENSMUSG00000031708 84.99 882.97 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
93. Tsc22d1 ENSMUSG00000022010 84.99 882.97 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
94. Itga6 ENSMUSG00000027111 84.65 879.44 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
95. Cox8a ENSMUSG00000035885 84.32 876.01 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
96. Marcks ENSMUSG00000069662 83.64 868.95 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
97. Ywhae ENSMUSG00000020849 83.64 868.95 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
98. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 83.31 865.52 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
99. Rpl37 ENSMUSG00000041841 82.64 858.56 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
100. Tmsb4x ENSMUSG00000049775 82.30 855.03 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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