Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s42.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3724.39 38695.08 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3716.83 38616.53 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Co2 ENSMUSG00000064354 2250.26 23379.40 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd4 ENSMUSG00000064363 2242.70 23300.85 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1988.19 20656.58 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1849.59 19216.58 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co1 ENSMUSG00000064351 1179.31 12252.61 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1138.99 11833.70 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. H19 ENSMUSG00000000031 1106.23 11493.33 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Mdk ENSMUSG00000027239 841.64 8744.34 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. mt-Co3 ENSMUSG00000064358 761.00 7906.52 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Igf2 ENSMUSG00000048583 750.93 7801.89 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Actb ENSMUSG00000029580 718.17 7461.53 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Nd3 ENSMUSG00000064360 698.01 7252.07 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. mt-Nd2 ENSMUSG00000064345 677.85 7042.62 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Eef1a1 ENSMUSG00000037742 632.49 6571.34 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Nd5 ENSMUSG00000064367 435.94 4529.26 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Rpsa ENSMUSG00000032518 423.34 4398.35 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Gm13340 ENSMUSG00000083563 405.70 4215.08 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Hmga2 ENSMUSG00000056758 362.86 3769.99 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Hbb-y ENSMUSG00000052187 332.62 3455.80 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
22. Npm1 ENSMUSG00000057113 282.23 2932.27 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Nedd4 ENSMUSG00000032216 269.63 2801.36 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Tuba1b ENSMUSG00000023004 264.59 2749.00 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Hsp90ab1 ENSMUSG00000023944 234.35 2434.81 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
26. Ubb ENSMUSG00000019505 226.79 2356.27 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
27. Set ENSMUSG00000054766 221.75 2303.90 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
28. Pkm ENSMUSG00000032294 219.23 2277.72 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Cfl1 ENSMUSG00000056201 209.15 2172.99 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Eif4g2 ENSMUSG00000005610 209.15 2172.99 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Tpt1 ENSMUSG00000060126 209.15 2172.99 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Tubb5 ENSMUSG00000001525 201.59 2094.45 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Hba-x ENSMUSG00000055609 194.03 2015.90 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
34. Gm10800 ENSMUSG00000075014 186.47 1937.36 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
35. Rps20 ENSMUSG00000028234 176.39 1832.63 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
36. mt-Rnr1 ENSMUSG00000064337 176.39 1832.63 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
37. Cdkn1c ENSMUSG00000037664 171.35 1780.27 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
38. Eef1b2 ENSMUSG00000025967 171.35 1780.27 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Hba-a1 ENSMUSG00000069919 168.83 1754.08 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
40. Hnrnpc ENSMUSG00000060373 168.83 1754.08 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Rps26 ENSMUSG00000025362 163.79 1701.72 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
42. Rpl23 ENSMUSG00000071415 158.75 1649.36 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
43. Atp5g3 ENSMUSG00000018770 156.23 1623.17 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Chchd2 ENSMUSG00000070493 156.23 1623.17 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. Peg3 ENSMUSG00000002265 156.23 1623.17 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
46. Acta2 ENSMUSG00000035783 153.71 1596.99 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
47. Fkbp1a ENSMUSG00000032966 151.19 1570.81 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Hsp90aa1 ENSMUSG00000021270 143.63 1492.26 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Rrm2 ENSMUSG00000020649 141.11 1466.08 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
50. Gm5805 ENSMUSG00000061848 136.07 1413.72 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
51. Rpl4 ENSMUSG00000032399 136.07 1413.72 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
52. Pbx1 ENSMUSG00000052534 133.55 1387.54 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
53. Eif5a ENSMUSG00000078812 131.03 1361.35 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
54. Rpl18a ENSMUSG00000045128 131.03 1361.35 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
55. Ybx1 ENSMUSG00000028639 131.03 1361.35 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
56. Col3a1 ENSMUSG00000026043 128.51 1335.17 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
57. Grb10 ENSMUSG00000020176 123.47 1282.81 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
58. Myl6 ENSMUSG00000090841 123.47 1282.81 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
59. Gm14303 ENSMUSG00000081344 120.95 1256.63 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
60. Gm5963 ENSMUSG00000052192 115.91 1204.26 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
61. Ran ENSMUSG00000029430 115.91 1204.26 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
62. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 115.91 1204.26 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
63. Hmgn1 ENSMUSG00000040681 113.39 1178.08 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
64. Col1a1 ENSMUSG00000001506 110.87 1151.90 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
65. Pabpc1 ENSMUSG00000022283 110.87 1151.90 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Rps3a1 ENSMUSG00000028081 110.87 1151.90 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
67. Ywhab ENSMUSG00000018326 110.87 1151.90 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
68. Banf1 ENSMUSG00000024844 108.35 1125.72 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
69. Rps4x ENSMUSG00000031320 108.35 1125.72 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
70. Wbp5 108.35 1125.72 WW domain binding protein 5
71. Ago2 ENSMUSG00000036698 105.84 1099.64 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
72. Hba-a2 ENSMUSG00000069917 105.84 1099.64 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
73. Paics ENSMUSG00000029247 105.84 1099.64 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
74. Rplp1 ENSMUSG00000007892 105.84 1099.64 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
75. Rps9 ENSMUSG00000006333 103.32 1073.46 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
76. Gm15459 ENSMUSG00000100801 95.76 994.91 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
77. Marcks ENSMUSG00000069662 95.76 994.91 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
78. Sf3b4 ENSMUSG00000068856 95.76 994.91 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
79. Cdk4 ENSMUSG00000006728 93.24 968.73 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
80. Gpc3 ENSMUSG00000055653 93.24 968.73 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
81. Ndufa12 ENSMUSG00000020022 93.24 968.73 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
82. Rpl32 ENSMUSG00000057841 93.24 968.73 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
83. Tmsb10 ENSMUSG00000079523 93.24 968.73 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
84. Tmsb4x ENSMUSG00000049775 93.24 968.73 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
85. Gm8292 ENSMUSG00000100215 90.72 942.55 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
86. Ngfrap1 90.72 942.55 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
87. Trim28 ENSMUSG00000005566 90.72 942.55 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
88. Ywhaz ENSMUSG00000022285 90.72 942.55 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
89. H3f3b ENSMUSG00000016559 88.20 916.37 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
90. Rpl39-ps ENSMUSG00000036305 88.20 916.37 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
91. Ywhae ENSMUSG00000020849 88.20 916.37 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
92. Pcbp1 ENSMUSG00000051695 85.68 890.18 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
93. Tecr ENSMUSG00000031708 85.68 890.18 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
94. Anp32b ENSMUSG00000028333 83.16 864.00 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
95. Igfbp4 ENSMUSG00000017493 83.16 864.00 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
96. Sparc ENSMUSG00000018593 83.16 864.00 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
97. Tpm1 ENSMUSG00000032366 83.16 864.00 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
98. Capns1 ENSMUSG00000001794 80.64 837.82 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
99. Crabp1 ENSMUSG00000032291 80.64 837.82 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
100. Ldha ENSMUSG00000063229 80.64 837.82 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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