Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s33.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3958.84 41131.07 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2845.12 29559.88 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2486.20 25830.82 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Co2 ENSMUSG00000064354 2455.20 25508.74 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2322.24 24127.33 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 2280.51 23693.77 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1319.41 13708.25 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1209.71 12568.50 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 859.74 8932.42 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 813.83 8455.43 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Actb ENSMUSG00000029580 758.38 7879.32 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Eef1a1 ENSMUSG00000037742 734.53 7631.53 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Igf2 ENSMUSG00000048583 718.43 7464.26 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Mdk ENSMUSG00000027239 589.06 6120.14 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. mt-Nd2 ENSMUSG00000064345 531.82 5525.44 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. mt-Rnr2 ENSMUSG00000064339 485.32 5042.32 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
17. Hbb-y ENSMUSG00000052187 471.01 4893.64 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Gm13340 ENSMUSG00000083563 352.36 3660.91 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Tuba1b ENSMUSG00000023004 266.51 2768.95 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Tpt1 ENSMUSG00000060126 264.72 2750.36 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
21. Tubb5 ENSMUSG00000001525 249.22 2589.32 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Hba-x ENSMUSG00000055609 246.24 2558.35 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
23. Hba-a1 ENSMUSG00000069919 242.66 2521.16 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. Hmga2 ENSMUSG00000056758 242.66 2521.16 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
25. Cfl1 ENSMUSG00000056201 225.96 2347.65 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Npm1 ENSMUSG00000057113 222.39 2310.56 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Nedd4 ENSMUSG00000032216 214.04 2223.81 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Rpsa ENSMUSG00000032518 213.44 2217.57 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Ubb ENSMUSG00000019505 207.48 2155.65 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Pkm ENSMUSG00000032294 203.31 2112.33 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Cdkn1c ENSMUSG00000037664 199.13 2068.90 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
32. Rpl4 ENSMUSG00000032399 186.61 1938.82 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. mt-Nd5 ENSMUSG00000064367 186.61 1938.82 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
34. Chchd2 ENSMUSG00000070493 176.48 1833.57 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Grb10 ENSMUSG00000020176 174.69 1814.97 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
36. Hsp90ab1 ENSMUSG00000023944 174.69 1814.97 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Eif4g2 ENSMUSG00000005610 173.50 1802.61 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Ybx1 ENSMUSG00000028639 158.59 1647.70 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
39. Rpl23 ENSMUSG00000071415 152.03 1579.54 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Rps20 ENSMUSG00000028234 144.88 1505.26 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Ran ENSMUSG00000029430 141.90 1474.30 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
42. Tmsb4x ENSMUSG00000049775 138.32 1437.10 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
43. Col3a1 ENSMUSG00000026043 134.15 1393.78 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
44. Rpl18a ENSMUSG00000045128 131.76 1368.94 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
45. Rps26 ENSMUSG00000025362 131.76 1368.94 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Set ENSMUSG00000054766 131.17 1362.81 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
47. Atp5g3 ENSMUSG00000018770 126.40 1313.26 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Hba-a2 ENSMUSG00000069917 125.80 1307.02 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
49. Hnrnpc ENSMUSG00000060373 122.82 1276.06 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Eef1b2 ENSMUSG00000025967 121.63 1263.70 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Hsp90aa1 ENSMUSG00000021270 121.63 1263.70 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Ywhab ENSMUSG00000018326 118.65 1232.74 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Rps4x ENSMUSG00000031320 118.05 1226.50 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
54. Eif5a ENSMUSG00000078812 117.45 1220.27 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
55. Myl6 ENSMUSG00000090841 117.45 1220.27 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
56. Tmsb10 ENSMUSG00000079523 116.26 1207.90 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
57. Pcbp1 ENSMUSG00000051695 115.66 1201.67 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
58. Rpl41 ENSMUSG00000093674 112.68 1170.71 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
59. Paics ENSMUSG00000029247 112.09 1164.58 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
60. U2af2 ENSMUSG00000030435 110.90 1152.22 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
61. Rpl37 ENSMUSG00000041841 109.70 1139.75 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
62. Rps3a1 ENSMUSG00000028081 107.32 1115.02 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
63. Peg3 ENSMUSG00000002265 106.13 1102.66 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
64. Fkbp1a ENSMUSG00000032966 104.34 1084.06 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
65. Banf1 ENSMUSG00000024844 103.74 1077.83 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
66. Meg3 ENSMUSG00000021268 103.14 1071.59 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
67. Cdk4 ENSMUSG00000006728 102.55 1065.46 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
68. Hbb-bh1 ENSMUSG00000052217 101.95 1059.23 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
69. Marcks ENSMUSG00000069662 101.36 1053.10 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
70. Rps5 ENSMUSG00000012848 101.36 1053.10 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
71. Gm14303 ENSMUSG00000081344 100.16 1040.63 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
72. Hnrnpa2b1 ENSMUSG00000004980 100.16 1040.63 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
73. Pbx1 ENSMUSG00000052534 99.57 1034.50 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
74. Hmgn1 ENSMUSG00000040681 98.37 1022.03 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
75. Actc1 ENSMUSG00000068614 96.59 1003.54 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
76. Gm5805 ENSMUSG00000061848 96.59 1003.54 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
77. Ywhae ENSMUSG00000020849 96.59 1003.54 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
78. Col2a1 ENSMUSG00000022483 95.99 997.31 collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
79. Rplp1 ENSMUSG00000007892 95.99 997.31 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
80. Ccnd2 ENSMUSG00000000184 94.80 984.94 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
81. Fscn1 ENSMUSG00000029581 91.82 953.98 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
82. Gm9844 ENSMUSG00000091955 91.82 953.98 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
83. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 91.82 953.98 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
84. H3f3b ENSMUSG00000016559 91.22 947.75 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
85. Pabpc1 ENSMUSG00000022283 91.22 947.75 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
86. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 89.43 929.15 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
87. Trim28 ENSMUSG00000005566 89.43 929.15 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
88. Hnrnpa0 ENSMUSG00000007836 88.84 923.02 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
89. Morf4l2 ENSMUSG00000031422 87.05 904.42 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
90. Tpm4 ENSMUSG00000031799 86.45 898.19 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
91. Ago2 ENSMUSG00000036698 85.26 885.82 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
92. Eef2 ENSMUSG00000034994 84.07 873.46 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
93. Ddx5 ENSMUSG00000020719 83.47 867.23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
94. Ndufa12 ENSMUSG00000020022 83.47 867.23 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
95. Rpl32 ENSMUSG00000057841 82.28 854.86 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
96. Anp32b ENSMUSG00000028333 81.68 848.63 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
97. Wbp5 81.08 842.40 WW domain binding protein 5
98. Rrm2 ENSMUSG00000020649 78.70 817.67 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
99. Ngfrap1 76.32 792.94 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
100. Tecr ENSMUSG00000031708 76.32 792.94 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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