Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s39.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4770.98 49570.02 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 4389.81 45609.70 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. Ptma ENSMUSG00000026238 3895.53 40474.18 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2634.72 27374.49 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2518.48 26166.77 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2367.69 24600.07 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2193.86 22793.99 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1270.24 13197.67 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. H19 ENSMUSG00000000031 1158.19 12033.48 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co1 ENSMUSG00000064351 1011.58 10510.22 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 898.49 9335.22 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd5 ENSMUSG00000064367 885.92 9204.62 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Actb ENSMUSG00000029580 759.21 7888.12 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Co3 ENSMUSG00000064358 657.63 6832.71 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Mdk ENSMUSG00000027239 559.20 5810.03 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Igf2 ENSMUSG00000048583 507.89 5276.93 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Rnr1 ENSMUSG00000064337 451.34 4689.38 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
18. Gm13340 ENSMUSG00000083563 409.45 4254.15 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Eef1a1 ENSMUSG00000037742 369.66 3840.73 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Hmga2 ENSMUSG00000056758 367.56 3818.91 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Npm1 ENSMUSG00000057113 268.08 2785.33 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Nedd4 ENSMUSG00000032216 255.51 2654.72 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Tuba1b ENSMUSG00000023004 222.00 2306.56 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Ubb ENSMUSG00000019505 222.00 2306.56 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Cfl1 ENSMUSG00000056201 217.81 2263.02 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Rpsa ENSMUSG00000032518 206.30 2143.44 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Hbb-y ENSMUSG00000052187 202.11 2099.90 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
28. Pkm ENSMUSG00000032294 200.01 2078.08 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Tubb5 ENSMUSG00000001525 180.12 1871.43 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Hnrnpc ENSMUSG00000060373 179.07 1860.52 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
31. Gm10800 ENSMUSG00000075014 173.83 1806.08 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
32. Cdkn1c ENSMUSG00000037664 172.79 1795.27 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
33. Hba-a1 ENSMUSG00000069919 169.64 1762.54 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
34. Rpl23 ENSMUSG00000071415 169.64 1762.54 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
35. Pbx1 ENSMUSG00000052534 168.60 1751.74 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
36. Eif4g2 ENSMUSG00000005610 167.55 1740.83 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Tpt1 ENSMUSG00000060126 165.46 1719.11 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Myl6 ENSMUSG00000090841 162.31 1686.39 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
39. Hsp90ab1 ENSMUSG00000023944 159.17 1653.76 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Peg3 ENSMUSG00000002265 154.98 1610.23 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
41. Rpl4 ENSMUSG00000032399 149.75 1555.89 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Set ENSMUSG00000054766 147.65 1534.07 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
43. Rpl18a ENSMUSG00000045128 145.56 1512.35 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
44. Rps20 ENSMUSG00000028234 144.51 1501.45 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Ywhab ENSMUSG00000018326 144.51 1501.45 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. Chchd2 ENSMUSG00000070493 143.46 1490.54 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Eef1b2 ENSMUSG00000025967 142.42 1479.73 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. U2af2 ENSMUSG00000030435 139.28 1447.11 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
49. Banf1 ENSMUSG00000024844 137.18 1425.29 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
50. Ndufa12 ENSMUSG00000020022 135.09 1403.57 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
51. Wbp5 129.85 1349.13 WW domain binding protein 5
52. Atp5g3 ENSMUSG00000018770 127.76 1327.41 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Grb10 ENSMUSG00000020176 127.76 1327.41 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
54. Malat1 ENSMUSG00000092341 123.57 1283.88 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
55. Eef2 ENSMUSG00000034994 121.47 1262.06 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
56. Eif5a ENSMUSG00000078812 119.38 1240.35 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
57. Ybx1 ENSMUSG00000028639 118.33 1229.44 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
58. Paics ENSMUSG00000029247 114.14 1185.90 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
59. Rps5 ENSMUSG00000012848 114.14 1185.90 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
60. Fkbp1a ENSMUSG00000032966 113.10 1175.10 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
61. Gm17132 ENSMUSG00000061331 113.10 1175.10 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
62. Acta2 ENSMUSG00000035783 112.05 1164.19 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
63. Rps26 ENSMUSG00000025362 109.95 1142.37 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
64. Rps4x ENSMUSG00000031320 109.95 1142.37 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
65. Ago2 ENSMUSG00000036698 107.86 1120.66 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
66. Col3a1 ENSMUSG00000026043 107.86 1120.66 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
67. Gm5805 ENSMUSG00000061848 107.86 1120.66 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
68. Cox8a ENSMUSG00000035885 104.72 1088.03 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
69. Rpl37 ENSMUSG00000041841 104.72 1088.03 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
70. Tecr ENSMUSG00000031708 102.62 1066.21 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.53 1044.50 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Hbb-bh1 ENSMUSG00000052217 99.48 1033.59 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
73. Sub1 ENSMUSG00000022205 96.34 1000.96 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
74. 2810417H13Rik 94.25 979.25 RIKEN cDNA 2810417H13 gene
75. Cdk4 ENSMUSG00000006728 94.25 979.25 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
76. Actc1 ENSMUSG00000068614 93.20 968.34 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
77. Hsp90aa1 ENSMUSG00000021270 93.20 968.34 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
78. Pabpc1 ENSMUSG00000022283 92.15 957.43 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
79. Hspe1 ENSMUSG00000073676 91.11 946.62 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
80. Gm14303 ENSMUSG00000081344 87.96 913.90 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
81. Ngfrap1 86.92 903.09 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
82. Rpl41 ENSMUSG00000093674 85.87 892.18 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
83. Top2a ENSMUSG00000020914 85.87 892.18 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
84. Hba-a2 ENSMUSG00000069917 84.82 881.27 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
85. Rps3a1 ENSMUSG00000028081 84.82 881.27 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
86. Arpc2 ENSMUSG00000006304 83.77 870.36 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
87. Tpm4 ENSMUSG00000031799 82.73 859.56 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
88. Gm14586 ENSMUSG00000083621 78.54 816.02 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Hmgn1 ENSMUSG00000040681 78.54 816.02 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
90. Son ENSMUSG00000022961 78.54 816.02 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
91. Trim28 ENSMUSG00000005566 78.54 816.02 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
92. Gpc3 ENSMUSG00000055653 77.49 805.11 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
93. Hba-x ENSMUSG00000055609 77.49 805.11 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
94. Lamp1 ENSMUSG00000031447 77.49 805.11 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
95. Rps9 ENSMUSG00000006333 77.49 805.11 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
96. Crabp1 ENSMUSG00000032291 75.40 783.40 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
97. Morf4l1 ENSMUSG00000062270 75.40 783.40 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
98. Ran ENSMUSG00000029430 75.40 783.40 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
99. Cdk1 ENSMUSG00000019942 72.26 750.77 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
100. Mapre1 ENSMUSG00000027479 72.26 750.77 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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