Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s28.

Sample reads: 96,234. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4986.42 51815.67 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3772.79 39204.41 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. Ptma ENSMUSG00000026238 3251.34 33785.84 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2784.09 28930.47 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd5 ENSMUSG00000064367 2495.76 25934.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
6. mt-Nd1 ENSMUSG00000064341 2270.83 23597.01 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Atp6 ENSMUSG00000064357 2090.88 21727.08 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Co2 ENSMUSG00000064354 1669.64 17349.83 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
9. mt-Nd2 ENSMUSG00000064345 1557.17 16181.11 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1007.10 10465.14 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. H19 ENSMUSG00000000031 909.97 9455.82 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. Actb ENSMUSG00000029580 882.36 9168.92 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Igf2 ENSMUSG00000048583 760.69 7904.60 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. mt-Nd3 ENSMUSG00000064360 705.48 7330.89 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Mdk ENSMUSG00000027239 684.01 7107.79 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Co3 ENSMUSG00000064358 579.72 6024.08 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. mt-Rnr1 ENSMUSG00000064337 440.67 4579.16 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
18. Gm13340 ENSMUSG00000083563 417.15 4334.75 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hmga2 ENSMUSG00000056758 386.48 4016.05 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Eef1a1 ENSMUSG00000037742 317.98 3304.24 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Gm10800 ENSMUSG00000075014 297.53 3091.74 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Npm1 ENSMUSG00000057113 277.08 2879.24 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Tubb5 ENSMUSG00000001525 237.20 2464.83 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Nedd4 ENSMUSG00000032216 229.03 2379.93 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Pkm ENSMUSG00000032294 219.82 2284.23 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Tuba1b ENSMUSG00000023004 215.73 2241.73 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Cfl1 ENSMUSG00000056201 201.42 2093.03 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Rpsa ENSMUSG00000032518 201.42 2093.03 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Cdkn1c ENSMUSG00000037664 178.93 1859.33 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
30. Eif4g2 ENSMUSG00000005610 177.90 1848.62 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Hsp90ab1 ENSMUSG00000023944 169.72 1763.62 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Hbb-y ENSMUSG00000052187 164.61 1710.52 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
33. Pbx1 ENSMUSG00000052534 164.61 1710.52 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
34. Tpt1 ENSMUSG00000060126 164.61 1710.52 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Grb10 ENSMUSG00000020176 161.54 1678.62 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
36. Peg3 ENSMUSG00000002265 159.50 1657.42 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
37. Ybx1 ENSMUSG00000028639 154.39 1604.32 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
38. Ubb ENSMUSG00000019505 149.28 1551.22 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
39. Rpl4 ENSMUSG00000032399 148.25 1540.52 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Gm17132 ENSMUSG00000061331 143.14 1487.42 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
41. Acta2 ENSMUSG00000035783 142.12 1476.82 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
42. Hnrnpc ENSMUSG00000060373 142.12 1476.82 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Rpl23 ENSMUSG00000071415 142.12 1476.82 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
44. Myl6 ENSMUSG00000090841 137.01 1423.72 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
45. Col3a1 ENSMUSG00000026043 131.89 1370.52 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
46. Malat1 ENSMUSG00000092341 131.89 1370.52 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
47. Set ENSMUSG00000054766 124.74 1296.22 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
48. Fkbp1a ENSMUSG00000032966 122.69 1274.92 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
49. Crabp1 ENSMUSG00000032291 121.67 1264.32 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
50. Ywhab ENSMUSG00000018326 121.67 1264.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. U2af2 ENSMUSG00000030435 119.62 1243.01 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
52. Atp5g3 ENSMUSG00000018770 117.58 1221.82 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Eef1b2 ENSMUSG00000025967 115.54 1200.62 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Chchd2 ENSMUSG00000070493 113.49 1179.32 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
55. Paics ENSMUSG00000029247 113.49 1179.32 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
56. Banf1 ENSMUSG00000024844 112.47 1168.72 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
57. Meg3 ENSMUSG00000021268 111.45 1158.12 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
58. Rps20 ENSMUSG00000028234 107.36 1115.62 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
59. Ago2 ENSMUSG00000036698 104.29 1083.71 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
60. Rps4x ENSMUSG00000031320 104.29 1083.71 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
61. Hsp90aa1 ENSMUSG00000021270 102.24 1062.41 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
62. Lamp1 ENSMUSG00000031447 102.24 1062.41 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
63. Hba-a1 ENSMUSG00000069919 100.20 1041.21 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
64. Rrm2 ENSMUSG00000020649 100.20 1041.21 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
65. Wbp5 100.20 1041.21 WW domain binding protein 5
66. Eif5a ENSMUSG00000078812 97.13 1009.31 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
67. Rps26 ENSMUSG00000025362 94.06 977.41 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
68. Kpnb1 ENSMUSG00000001440 93.04 966.81 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
69. Cdk4 ENSMUSG00000006728 92.02 956.21 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
70. Pabpc1 ENSMUSG00000022283 92.02 956.21 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Hspe1 ENSMUSG00000073676 91.00 945.61 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
72. Tmsb4x ENSMUSG00000049775 91.00 945.61 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
73. Ndufa12 ENSMUSG00000020022 89.97 934.91 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
74. Pcbp1 ENSMUSG00000051695 89.97 934.91 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
75. Col1a2 ENSMUSG00000029661 87.93 913.71 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
76. Marcks ENSMUSG00000069662 85.88 892.41 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
77. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 84.86 881.81 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
78. Rpl18a ENSMUSG00000045128 83.84 871.21 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
79. Tecr ENSMUSG00000031708 83.84 871.21 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
80. Hba-x ENSMUSG00000055609 81.79 849.91 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
81. Scd2 ENSMUSG00000025203 81.79 849.91 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
82. Gm5805 ENSMUSG00000061848 80.77 839.31 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
83. Rps5 ENSMUSG00000012848 80.77 839.31 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
84. Col1a1 ENSMUSG00000001506 79.75 828.71 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
85. Gm21897 ENSMUSG00000094472 79.75 828.71 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
86. Ran ENSMUSG00000029430 79.75 828.71 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
87. Hmgn1 ENSMUSG00000040681 77.71 807.51 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
88. Rpl32 ENSMUSG00000057841 77.71 807.51 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
89. Son ENSMUSG00000022961 77.71 807.51 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
90. Srsf3 ENSMUSG00000071172 77.71 807.51 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
91. Tuba1a ENSMUSG00000072235 77.71 807.51 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
92. Fscn1 ENSMUSG00000029581 76.68 796.81 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
93. Hnrnpa2b1 ENSMUSG00000004980 76.68 796.81 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
94. Ngfrap1 76.68 796.81 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
95. Top2a ENSMUSG00000020914 76.68 796.81 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
96. Adprh ENSMUSG00000002844 75.66 786.21 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
97. Anp32b ENSMUSG00000028333 75.66 786.21 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
98. Tpm1 ENSMUSG00000032366 75.66 786.21 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
99. Actc1 ENSMUSG00000068614 74.64 775.61 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
100. Morf4l1 ENSMUSG00000062270 74.64 775.61 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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