Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s52.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3557.59 36961.34 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3321.66 34510.16 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2736.29 28428.50 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2468.72 25648.60 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 2021.61 21003.38 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1965.89 20424.48 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1144.59 11891.64 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1022.84 10626.73 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. H19 ENSMUSG00000000031 982.95 10212.29 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Mdk ENSMUSG00000027239 844.00 8768.68 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. Actb ENSMUSG00000029580 836.43 8690.03 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Rnr2 ENSMUSG00000064339 836.43 8690.03 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. mt-Nd3 ENSMUSG00000064360 694.73 7217.85 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Hmga2 ENSMUSG00000056758 598.44 6217.45 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
15. Igf2 ENSMUSG00000048583 588.12 6110.23 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Eef1a1 ENSMUSG00000037742 456.74 4745.27 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Co3 ENSMUSG00000064358 445.73 4630.88 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. mt-Nd5 ENSMUSG00000064367 443.67 4609.48 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Pkm ENSMUSG00000032294 390.70 4059.15 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Col1a1 ENSMUSG00000001506 372.13 3866.22 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
21. Gm13340 ENSMUSG00000083563 334.30 3473.19 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Tuba1b ENSMUSG00000023004 312.97 3251.58 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Rpsa ENSMUSG00000032518 308.85 3208.78 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Cfl1 ENSMUSG00000056201 299.91 3115.89 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Tubb5 ENSMUSG00000001525 286.15 2972.94 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Gm10800 ENSMUSG00000075014 227.68 2365.47 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
27. Npm1 ENSMUSG00000057113 224.24 2329.73 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Hsp90ab1 ENSMUSG00000023944 209.11 2172.53 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Col3a1 ENSMUSG00000026043 207.73 2158.20 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
30. Rpl4 ENSMUSG00000032399 202.23 2101.05 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Tpt1 ENSMUSG00000060126 197.41 2050.98 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Rps26 ENSMUSG00000025362 192.60 2001.00 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
33. Nedd4 ENSMUSG00000032216 189.85 1972.43 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
34. Set ENSMUSG00000054766 188.47 1958.10 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
35. Hnrnpc ENSMUSG00000060373 185.72 1929.53 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. mt-Rnr1 ENSMUSG00000064337 176.09 1829.48 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
37. Chchd2 ENSMUSG00000070493 175.40 1822.31 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Ubb ENSMUSG00000019505 173.34 1800.90 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
39. Rps20 ENSMUSG00000028234 171.96 1786.57 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Hbb-y ENSMUSG00000052187 171.28 1779.50 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
41. Rpl18a ENSMUSG00000045128 159.58 1657.95 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
42. Eif5a ENSMUSG00000078812 158.21 1643.71 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Grb10 ENSMUSG00000020176 157.52 1636.54 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
44. Banf1 ENSMUSG00000024844 152.70 1586.47 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
45. U2af2 ENSMUSG00000030435 152.02 1579.40 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
46. Ywhab ENSMUSG00000018326 149.26 1550.73 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. Atp5g3 ENSMUSG00000018770 145.83 1515.09 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Rpl23 ENSMUSG00000071415 140.32 1457.85 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
49. Eif4g2 ENSMUSG00000005610 139.63 1450.68 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
50. Pbx1 ENSMUSG00000052534 136.88 1422.11 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
51. Trim28 ENSMUSG00000005566 130.69 1357.79 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
52. Myl6 ENSMUSG00000090841 130.00 1350.63 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
53. Rplp1 ENSMUSG00000007892 128.63 1336.39 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. Ybx1 ENSMUSG00000028639 128.63 1336.39 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
55. Eef1b2 ENSMUSG00000025967 125.19 1300.65 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Tecr ENSMUSG00000031708 122.44 1272.08 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
57. Wbp5 122.44 1272.08 WW domain binding protein 5
58. Ago2 ENSMUSG00000036698 119.69 1243.51 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
59. Rrm2 ENSMUSG00000020649 117.62 1222.01 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
60. Col1a2 ENSMUSG00000029661 115.56 1200.60 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
61. Ddx39b ENSMUSG00000019432 113.50 1179.20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
62. Ldha ENSMUSG00000063229 112.12 1164.86 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
63. Pcbp1 ENSMUSG00000051695 112.12 1164.86 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
64. Ngfrap1 111.43 1157.69 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
65. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 111.43 1157.69 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
66. Rps5 ENSMUSG00000012848 110.06 1143.46 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
67. Pabpc1 ENSMUSG00000022283 109.37 1136.29 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
68. Fkbp1a ENSMUSG00000032966 107.99 1121.95 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
69. Ndufa12 ENSMUSG00000020022 105.93 1100.55 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
70. Peg3 ENSMUSG00000002265 104.55 1086.22 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
71. Rps3a1 ENSMUSG00000028081 103.87 1079.15 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
72. Cox8a ENSMUSG00000035885 103.18 1071.98 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
73. Lamp1 ENSMUSG00000031447 103.18 1071.98 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
74. Ran ENSMUSG00000029430 103.18 1071.98 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
75. Rpl8 ENSMUSG00000003970 103.18 1071.98 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
76. Sfrp1 ENSMUSG00000031548 103.18 1071.98 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
77. Son ENSMUSG00000022961 103.18 1071.98 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
78. Gm14303 ENSMUSG00000081344 101.80 1057.64 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
79. Ccnd2 ENSMUSG00000000184 100.43 1043.41 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
80. Rpl37 ENSMUSG00000041841 99.05 1029.07 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
81. Erdr1 98.36 1021.90 erythroid differentiation regulator 1, transcript variant 1, non-coding
82. Paics ENSMUSG00000029247 98.36 1021.90 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
83. Anp32b ENSMUSG00000028333 97.68 1014.84 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Crabp1 ENSMUSG00000032291 97.68 1014.84 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
85. Hba-x ENSMUSG00000055609 97.68 1014.84 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
86. Hsp90aa1 ENSMUSG00000021270 97.68 1014.84 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
87. Rpl26 ENSMUSG00000060938 96.99 1007.67 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
88. Meg3 ENSMUSG00000021268 96.30 1000.50 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
89. Rps4x ENSMUSG00000031320 94.24 979.10 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
90. Gm5805 ENSMUSG00000061848 92.86 964.76 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
91. Gm17132 ENSMUSG00000061331 92.17 957.59 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
92. Hmgn1 ENSMUSG00000040681 91.48 950.43 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
93. Marcksl1 ENSMUSG00000047945 89.42 929.02 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
94. Rpl32 ENSMUSG00000057841 89.42 929.02 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
95. Hnrnpa0 ENSMUSG00000007836 88.05 914.79 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
96. Ywhae ENSMUSG00000020849 88.05 914.79 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
97. Fkbp4 ENSMUSG00000030357 87.36 907.62 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
98. Hba-a1 ENSMUSG00000069919 86.67 900.45 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
99. Eef2 ENSMUSG00000034994 85.29 886.11 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
100. Malat1 ENSMUSG00000092341 83.23 864.71 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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