Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s40.

Sample reads: 96,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4094.66 42542.77 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Co2 ENSMUSG00000064354 3164.43 32877.85 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
3. mt-Atp6 ENSMUSG00000064357 3020.26 31379.95 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2928.43 30425.85 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. Ptma ENSMUSG00000026238 2915.57 30292.24 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd4 ENSMUSG00000064363 2860.47 29719.76 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1371.01 14244.54 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1053.28 10943.39 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd3 ENSMUSG00000064360 987.16 10256.41 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 969.71 10075.11 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Rnr2 ENSMUSG00000064339 934.82 9712.61 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. Actb ENSMUSG00000029580 695.15 7222.48 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Hmga2 ENSMUSG00000056758 669.43 6955.25 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
14. Mdk ENSMUSG00000027239 630.87 6554.62 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Eef1a1 ENSMUSG00000037742 546.38 5676.79 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. mt-Co3 ENSMUSG00000064358 504.14 5237.92 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Igf2 ENSMUSG00000048583 490.37 5094.85 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. mt-Nd5 ENSMUSG00000064367 489.45 5085.30 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Rpsa ENSMUSG00000032518 449.96 4675.00 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Gm13340 ENSMUSG00000083563 423.33 4398.32 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Cfl1 ENSMUSG00000056201 299.36 3110.30 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Rps26 ENSMUSG00000025362 245.18 2547.38 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
23. Npm1 ENSMUSG00000057113 242.43 2518.80 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Gm10800 ENSMUSG00000075014 238.76 2480.67 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
25. Tuba1b ENSMUSG00000023004 236.00 2452.00 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Set ENSMUSG00000054766 233.25 2423.42 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
27. Pkm ENSMUSG00000032294 213.04 2213.45 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Ubb ENSMUSG00000019505 213.04 2213.45 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Hnrnpc ENSMUSG00000060373 204.78 2127.63 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
30. Rps20 ENSMUSG00000028234 204.78 2127.63 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
31. Tubb5 ENSMUSG00000001525 203.86 2118.07 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
32. Pbx1 ENSMUSG00000052534 189.17 1965.44 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
33. Rrm2 ENSMUSG00000020649 189.17 1965.44 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
34. Tpt1 ENSMUSG00000060126 180.90 1879.52 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Ywhab ENSMUSG00000018326 179.07 1860.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
36. Rpl18a ENSMUSG00000045128 177.23 1841.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
37. mt-Rnr1 ENSMUSG00000064337 174.48 1812.82 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
38. Eif4g2 ENSMUSG00000005610 173.56 1803.26 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Rpl4 ENSMUSG00000032399 171.72 1784.14 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Hsp90ab1 ENSMUSG00000023944 169.88 1765.02 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
41. Nedd4 ENSMUSG00000032216 169.88 1765.02 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
42. Eif5a ENSMUSG00000078812 165.29 1717.33 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Atp5g3 ENSMUSG00000018770 161.62 1679.20 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Fkbp1a ENSMUSG00000032966 159.78 1660.08 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
45. Chchd2 ENSMUSG00000070493 146.01 1517.02 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Hsp90aa1 ENSMUSG00000021270 142.34 1478.89 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
47. Banf1 ENSMUSG00000024844 140.50 1459.77 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Rplp1 ENSMUSG00000007892 139.58 1450.21 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
49. Rps5 ENSMUSG00000012848 139.58 1450.21 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
50. Cox8a ENSMUSG00000035885 136.83 1421.64 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
51. Gm14303 ENSMUSG00000081344 136.83 1421.64 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
52. Rpl23 ENSMUSG00000071415 134.99 1402.52 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Gpc3 ENSMUSG00000055653 134.07 1392.96 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
54. Rpl37 ENSMUSG00000041841 134.07 1392.96 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
55. Trim28 ENSMUSG00000005566 134.07 1392.96 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
56. Peg3 ENSMUSG00000002265 129.48 1345.27 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
57. Ago2 ENSMUSG00000036698 128.56 1335.71 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
58. Eef1b2 ENSMUSG00000025967 127.64 1326.16 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
59. Gm14586 ENSMUSG00000083621 125.81 1307.14 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
60. Pabpc1 ENSMUSG00000022283 124.89 1297.58 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
61. Grb10 ENSMUSG00000020176 123.05 1278.47 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
62. Rpl32 ENSMUSG00000057841 123.05 1278.47 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
63. Gm5805 ENSMUSG00000061848 121.21 1259.35 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
64. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 117.54 1221.22 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
65. Rps4x ENSMUSG00000031320 116.62 1211.66 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Ybx1 ENSMUSG00000028639 113.87 1183.09 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
67. Paics ENSMUSG00000029247 112.03 1163.97 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
68. Rpl39-ps ENSMUSG00000036305 112.03 1163.97 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
69. Rps3a1 ENSMUSG00000028081 110.19 1144.85 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
70. Wbp5 109.28 1135.40 WW domain binding protein 5
71. Myl6 ENSMUSG00000090841 108.36 1125.84 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
72. Gm5963 ENSMUSG00000052192 105.60 1097.16 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
73. U2af2 ENSMUSG00000030435 104.69 1087.71 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
74. Ngfrap1 102.85 1068.59 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
75. Rpl26 ENSMUSG00000060938 101.93 1059.03 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
76. 2810417H13Rik 101.01 1049.48 RIKEN cDNA 2810417H13 gene
77. Son ENSMUSG00000022961 100.09 1039.92 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
78. Serbp1 ENSMUSG00000036371 97.34 1011.34 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
79. Rpl8 ENSMUSG00000003970 96.42 1001.79 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
80. Tecr ENSMUSG00000031708 95.50 992.23 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
81. Ran ENSMUSG00000029430 94.58 982.67 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
82. Hmgn1 ENSMUSG00000040681 92.75 963.66 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
83. Ddx39b ENSMUSG00000019432 91.83 954.10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
84. Meg3 ENSMUSG00000021268 89.07 925.42 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
85. Tsc22d1 ENSMUSG00000022010 88.16 915.97 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
86. Tmpo ENSMUSG00000019961 86.32 896.85 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
87. Ldha ENSMUSG00000063229 85.40 887.29 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
88. Ndufa12 ENSMUSG00000020022 85.40 887.29 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
89. Crabp1 ENSMUSG00000032291 83.56 868.17 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
90. Sfrp1 ENSMUSG00000031548 83.56 868.17 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
91. Anp32b ENSMUSG00000028333 80.81 839.60 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
92. Cdk4 ENSMUSG00000006728 79.89 830.04 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
93. Pcbp1 ENSMUSG00000051695 79.89 830.04 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
94. Srsf3 ENSMUSG00000071172 79.89 830.04 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
95. Sub1 ENSMUSG00000022205 79.89 830.04 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Gm15459 ENSMUSG00000100801 78.05 810.93 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
97. Ywhae ENSMUSG00000020849 78.05 810.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
98. Fkbp4 ENSMUSG00000030357 77.14 801.47 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
99. Gm9846 Gm9846 77.14 801.47
100. Calm1 ENSMUSG00000001175 76.22 791.91 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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