Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s34.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4433.24 46065.40 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3126.35 32485.63 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2785.26 28941.39 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2354.66 24467.06 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 2088.94 21705.99 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1990.01 20678.02 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1255.06 13041.22 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1099.59 11425.74 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. H19 ENSMUSG00000000031 1089.23 11318.09 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Nd2 ENSMUSG00000064345 975.22 10133.42 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Actb ENSMUSG00000029580 884.76 9193.46 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Hmga2 ENSMUSG00000056758 734.95 7636.80 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
13. mt-Nd3 ENSMUSG00000064360 642.61 6677.30 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Eef1a1 ENSMUSG00000037742 641.67 6667.54 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Mdk ENSMUSG00000027239 606.80 6305.20 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Igf2 ENSMUSG00000048583 542.73 5639.46 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 449.45 4670.20 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Co3 ENSMUSG00000064358 434.37 4513.50 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Rpsa ENSMUSG00000032518 391.97 4072.93 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. mt-Nd5 ENSMUSG00000064367 349.57 3632.35 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Pkm ENSMUSG00000032294 324.13 3368.01 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Tuba1b ENSMUSG00000023004 274.19 2849.08 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Cfl1 ENSMUSG00000056201 272.31 2829.55 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Npm1 ENSMUSG00000057113 271.36 2819.68 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Set ENSMUSG00000054766 261.00 2712.03 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Hbb-y ENSMUSG00000052187 243.10 2526.03 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
27. Tubb5 ENSMUSG00000001525 241.21 2506.39 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Pbx1 ENSMUSG00000052534 224.25 2330.16 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
29. Hnrnpc ENSMUSG00000060373 209.18 2173.57 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
30. Rpl18a ENSMUSG00000045128 208.23 2163.70 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
31. Ubb ENSMUSG00000019505 199.75 2075.58 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Chchd2 ENSMUSG00000070493 198.81 2065.82 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
33. Eif4g2 ENSMUSG00000005610 198.81 2065.82 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Nedd4 ENSMUSG00000032216 193.16 2007.11 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. Hsp90ab1 ENSMUSG00000023944 190.33 1977.70 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Rpl4 ENSMUSG00000032399 173.37 1801.47 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Rps20 ENSMUSG00000028234 171.49 1781.94 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Rps26 ENSMUSG00000025362 171.49 1781.94 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
39. Ywhab ENSMUSG00000018326 170.55 1772.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
40. Rpl37 ENSMUSG00000041841 163.95 1703.59 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
41. Tpt1 ENSMUSG00000060126 160.18 1664.42 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. mt-Rnr1 ENSMUSG00000064337 159.24 1654.65 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
43. Rplp1 ENSMUSG00000007892 155.47 1615.47 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
44. Rps5 ENSMUSG00000012848 153.59 1595.94 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
45. Atp5g3 ENSMUSG00000018770 152.64 1586.07 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Eif5a ENSMUSG00000078812 151.70 1576.30 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Ybx1 ENSMUSG00000028639 150.76 1566.53 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
48. Rpl23 ENSMUSG00000071415 146.99 1527.36 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
49. 2810417H13Rik 145.10 1507.72 RIKEN cDNA 2810417H13 gene
50. U2af2 ENSMUSG00000030435 143.22 1488.19 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
51. Peg3 ENSMUSG00000002265 140.39 1458.78 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
52. Eef1b2 ENSMUSG00000025967 135.68 1409.84 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Myl6 ENSMUSG00000090841 135.68 1409.84 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
54. Rpl41 ENSMUSG00000093674 133.80 1390.30 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
55. Pabpc1 ENSMUSG00000022283 130.03 1351.13 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
56. Rps4x ENSMUSG00000031320 129.09 1341.36 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
57. Hsp90aa1 ENSMUSG00000021270 124.38 1292.42 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Ago2 ENSMUSG00000036698 121.55 1263.02 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
59. Tecr ENSMUSG00000031708 121.55 1263.02 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
60. Gm14303 ENSMUSG00000081344 120.61 1253.25 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
61. Trim28 ENSMUSG00000005566 119.66 1243.38 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
62. Grb10 ENSMUSG00000020176 118.72 1233.61 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
63. Malat1 ENSMUSG00000092341 117.78 1223.84 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
64. Cdkn1c ENSMUSG00000037664 114.95 1194.44 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
65. Son ENSMUSG00000022961 114.01 1184.67 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
66. Fkbp1a ENSMUSG00000032966 112.13 1165.13 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
67. Ran ENSMUSG00000029430 112.13 1165.13 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Banf1 ENSMUSG00000024844 111.18 1155.26 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
69. Cox8a ENSMUSG00000035885 109.30 1135.73 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
70. Pcbp1 ENSMUSG00000051695 109.30 1135.73 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Meg3 ENSMUSG00000021268 108.36 1125.96 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
72. Eef2 ENSMUSG00000034994 106.47 1106.32 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
73. Rpl32 ENSMUSG00000057841 105.53 1096.55 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
74. Gm14586 ENSMUSG00000083621 104.59 1086.79 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
75. Gm5805 ENSMUSG00000061848 104.59 1086.79 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. Rps3a1 ENSMUSG00000028081 104.59 1086.79 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
77. Ldha ENSMUSG00000063229 103.65 1077.02 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
78. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 103.65 1077.02 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
79. Ngfrap1 98.94 1028.08 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
80. Paics ENSMUSG00000029247 98.94 1028.08 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
81. Rpl8 ENSMUSG00000003970 97.99 1018.21 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
82. Rrm2 ENSMUSG00000020649 97.99 1018.21 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
83. Hba-a1 ENSMUSG00000069919 96.11 998.67 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
84. Cdk4 ENSMUSG00000006728 92.34 959.50 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
85. Rpl26 ENSMUSG00000060938 92.34 959.50 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
86. Rps8 ENSMUSG00000047675 92.34 959.50 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
87. Serbp1 ENSMUSG00000036371 90.45 939.86 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
88. Wbp5 90.45 939.86 WW domain binding protein 5
89. Gm10073 ENSMUSG00000060019 88.57 920.32 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
90. Tpm4 ENSMUSG00000031799 87.63 910.56 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
91. Ywhaz ENSMUSG00000022285 87.63 910.56 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
92. Flrt3 ENSMUSG00000051379 86.69 900.79 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
93. Rpl39-ps ENSMUSG00000036305 86.69 900.79 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
94. Lamp1 ENSMUSG00000031447 85.74 890.92 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
95. Lrrc17 ENSMUSG00000039883 85.74 890.92 leucine rich repeat containing 17 [Source:MGI Symbol;Acc:MGI:1921761]
96. Hmgn1 ENSMUSG00000040681 84.80 881.15 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
97. Calm1 ENSMUSG00000001175 82.92 861.61 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
98. Cd24a ENSMUSG00000047139 82.92 861.61 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
99. Hnrnpa0 ENSMUSG00000007836 82.92 861.61 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
100. Hnrnpa2b1 ENSMUSG00000004980 81.97 851.74 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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