Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s30.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4216.04 43805.83 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3316.50 34459.36 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2680.77 27853.94 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2362.41 24546.10 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2280.09 23690.77 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2019.26 20980.67 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. H19 ENSMUSG00000000031 1563.04 16240.42 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1180.21 12262.71 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 1073.10 11149.81 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Nd2 ENSMUSG00000064345 914.42 9501.08 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Rnr2 ENSMUSG00000064339 791.44 8223.28 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. Igf2 ENSMUSG00000048583 725.98 7543.13 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. mt-Nd3 ENSMUSG00000064360 713.09 7409.20 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Mdk ENSMUSG00000027239 552.42 5739.80 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Eef1a1 ENSMUSG00000037742 501.84 5214.26 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. mt-Co3 ENSMUSG00000064358 446.30 4637.18 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Rpsa ENSMUSG00000032518 434.40 4513.54 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. Hmga2 ENSMUSG00000056758 405.64 4214.71 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Pkm ENSMUSG00000032294 397.70 4132.21 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Gm13340 ENSMUSG00000083563 395.72 4111.64 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Cfl1 ENSMUSG00000056201 319.35 3318.14 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. mt-Nd5 ENSMUSG00000064367 303.48 3153.24 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Tubb5 ENSMUSG00000001525 251.91 2617.41 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Tuba1b ENSMUSG00000023004 242.99 2524.73 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Npm1 ENSMUSG00000057113 239.02 2483.48 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. U2af2 ENSMUSG00000030435 227.12 2359.84 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
27. Hsp90ab1 ENSMUSG00000023944 225.13 2339.16 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. Rps26 ENSMUSG00000025362 217.20 2256.77 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
29. Tpt1 ENSMUSG00000060126 203.31 2112.45 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Set ENSMUSG00000054766 202.32 2102.16 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
31. Rpl18a ENSMUSG00000045128 197.36 2050.63 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
32. Ywhab ENSMUSG00000018326 195.38 2030.05 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
33. Hbb-y ENSMUSG00000052187 190.42 1978.52 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
34. Hnrnpc ENSMUSG00000060373 184.47 1916.69 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
35. Nedd4 ENSMUSG00000032216 184.47 1916.69 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
36. Atp5g3 ENSMUSG00000018770 183.48 1906.41 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Eif4g2 ENSMUSG00000005610 175.54 1823.91 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Cdkn1c ENSMUSG00000037664 173.56 1803.34 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
39. Eif5a ENSMUSG00000078812 170.59 1772.48 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. Chchd2 ENSMUSG00000070493 164.63 1710.55 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rpl37 ENSMUSG00000041841 162.65 1689.98 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
42. Pbx1 ENSMUSG00000052534 161.66 1679.69 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
43. Ybx1 ENSMUSG00000028639 159.68 1659.12 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
44. Peg3 ENSMUSG00000002265 153.73 1597.30 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
45. Rps20 ENSMUSG00000028234 153.73 1597.30 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
46. Myl6 ENSMUSG00000090841 150.75 1566.33 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
47. Rpl23 ENSMUSG00000071415 145.79 1514.80 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Ubb ENSMUSG00000019505 145.79 1514.80 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
49. Banf1 ENSMUSG00000024844 144.80 1504.51 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
50. mt-Rnr1 ENSMUSG00000064337 143.81 1494.23 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
51. Eef2 ENSMUSG00000034994 142.82 1483.94 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
52. Rplp1 ENSMUSG00000007892 142.82 1483.94 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
53. Rps5 ENSMUSG00000012848 142.82 1483.94 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
54. Acta2 ENSMUSG00000035783 140.83 1463.26 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
55. Eef1b2 ENSMUSG00000025967 139.84 1452.98 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Fkbp1a ENSMUSG00000032966 139.84 1452.98 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Gm14303 ENSMUSG00000081344 136.87 1422.12 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
58. Gm5805 ENSMUSG00000061848 133.89 1391.15 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
59. Grb10 ENSMUSG00000020176 133.89 1391.15 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
60. Rpl4 ENSMUSG00000032399 133.89 1391.15 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
61. Lamp1 ENSMUSG00000031447 131.91 1370.58 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
62. Rps4x ENSMUSG00000031320 128.93 1339.62 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
63. Ago2 ENSMUSG00000036698 127.94 1329.33 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
64. Cox8a ENSMUSG00000035885 127.94 1329.33 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
65. Pabpc1 ENSMUSG00000022283 127.94 1329.33 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Ccnd2 ENSMUSG00000000184 121.99 1267.51 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
67. Pcbp1 ENSMUSG00000051695 120.00 1246.83 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
68. Trim28 ENSMUSG00000005566 120.00 1246.83 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Rpl41 ENSMUSG00000093674 117.03 1215.97 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
70. Tecr ENSMUSG00000031708 114.05 1185.01 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
71. Ldha ENSMUSG00000063229 112.07 1164.44 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
72. 2810417H13Rik 111.08 1154.15 RIKEN cDNA 2810417H13 gene
73. Ran ENSMUSG00000029430 111.08 1154.15 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
74. Fscn1 ENSMUSG00000029581 109.10 1133.58 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
75. Paics ENSMUSG00000029247 108.10 1123.19 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
76. Ywhae ENSMUSG00000020849 107.11 1112.90 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
77. Hsp90aa1 ENSMUSG00000021270 104.14 1082.04 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
78. Rpl8 ENSMUSG00000003970 104.14 1082.04 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
79. Meg3 ENSMUSG00000021268 103.14 1071.65 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
80. Hmgn1 ENSMUSG00000040681 101.16 1051.08 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
81. Rpl26 ENSMUSG00000060938 101.16 1051.08 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
82. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 100.17 1040.79 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
83. Rps8 ENSMUSG00000047675 99.18 1030.51 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
84. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.19 1020.22 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
85. Tmsb10 ENSMUSG00000079523 98.19 1020.22 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
86. Tpm4 ENSMUSG00000031799 98.19 1020.22 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
87. Rps3a1 ENSMUSG00000028081 97.19 1009.83 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
88. Tmsb4x ENSMUSG00000049775 95.21 989.26 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
89. Gm10800 ENSMUSG00000075014 94.22 978.97 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
90. Rrm2 ENSMUSG00000020649 93.23 968.69 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
91. Gm14586 ENSMUSG00000083621 91.24 948.01 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
92. Rpl32 ENSMUSG00000057841 91.24 948.01 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
93. Ndufa12 ENSMUSG00000020022 89.26 927.44 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
94. Serbp1 ENSMUSG00000036371 89.26 927.44 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
95. Rpl39-ps ENSMUSG00000036305 87.28 906.86 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
96. Adprh ENSMUSG00000002844 86.28 896.47 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
97. Ddx39b ENSMUSG00000019432 85.29 886.19 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
98. Ngfrap1 85.29 886.19 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
99. Srsf3 ENSMUSG00000071172 84.30 875.90 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
100. Cdk4 ENSMUSG00000006728 83.31 865.61 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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